Magnesium in PDB 3gy1: Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052

The structure of Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052, PDB code: 3gy1 was solved by V.N.Malashkevich, R.Toro, C.Morano, J.M.Sauder, S.K.Burley, S.C.Almo, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.89 / 1.60
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	111.313, 111.313, 141.345, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21.2

The binding sites of Magnesium atom in the Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052 (pdb code 3gy1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052, PDB code: 3gy1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:24.2 occ:1.00 OE1 A:GLU259 2.0 19.2 1.0 O B:HOH545 2.0 25.9 1.0 O B:HOH746 2.1 34.3 1.0 OD2 A:ASP207 2.1 19.7 1.0 O B:HOH509 2.2 22.4 1.0 OE2 A:GLU233 2.4 22.9 1.0 CD A:GLU259 3.0 23.8 1.0 CD A:GLU233 3.1 18.9 1.0 CG A:ASP207 3.1 19.2 1.0 OE2 A:GLU259 3.3 22.0 1.0 OD1 A:ASP207 3.4 13.8 1.0 OE1 A:GLU233 3.5 21.4 1.0 CG A:GLU233 4.1 20.6 1.0 NH1 A:ARG280 4.1 17.0 1.0 O B:HOH731 4.1 23.3 1.0 O B:HOH640 4.2 19.8 1.0 CB A:ASP207 4.3 14.4 1.0 CG A:GLU259 4.3 19.8 1.0 ND1 A:HIS209 4.3 30.5 1.0 OD2 A:ASP234 4.4 22.3 1.0 O B:HOH553 4.5 25.6 1.0 CD2 A:HIS309 4.6 10.9 1.0 NE2 A:HIS309 4.6 15.8 1.0 CE1 A:HIS209 4.8 32.4 1.0 OH B:TYR81 4.9 23.1 1.0 CG A:ASP234 5.0 32.1 1.0 CB A:GLU259 5.0 18.8 1.0 O B:HOH747 5.0 36.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg500 b:24.4 occ:1.00 OE1 B:GLU259 2.0 24.4 1.0 O B:HOH611 2.2 21.9 1.0 O B:HOH655 2.2 26.4 1.0 O B:HOH495 2.2 21.1 1.0 OD2 B:ASP207 2.2 20.7 1.0 OE2 B:GLU233 2.4 25.3 1.0 CD B:GLU259 2.9 24.6 1.0 CD B:GLU233 3.1 16.4 1.0 OE2 B:GLU259 3.1 23.4 1.0 CG B:ASP207 3.2 17.2 1.0 OD1 B:ASP207 3.6 15.3 1.0 OE1 B:GLU233 3.6 25.9 1.0 O B:HOH748 3.7 26.3 1.0 CG B:GLU233 4.0 23.2 1.0 NH1 B:ARG280 4.1 15.6 1.0 O B:HOH608 4.2 25.6 1.0 CG B:GLU259 4.2 22.0 1.0 O B:HOH519 4.3 19.8 1.0 CE1 B:HIS309 4.3 13.9 1.0 OD2 B:ASP234 4.3 22.0 1.0 O B:HOH446 4.5 20.5 1.0 ND1 B:HIS309 4.5 17.9 1.0 CB B:ASP207 4.5 12.5 1.0 ND1 B:HIS209 4.5 28.5 1.0 OH A:TYR81 4.8 22.8 1.0 CB B:GLU259 4.8 19.4 1.0 CG B:ASP234 5.0 45.7 1.0

V.N.Malashkevich, R.Toro, C.Morano, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Putative Mandelate Racemase/Muconate Lactonizing Protein From Clostridium Beijerinckii Ncimb 8052 To Be Published.