Magnesium in PDB 3hyo: Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp

All present enzymatic activity of Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp:
2.7.1.35;

The structure of Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp, PDB code: 3hyo was solved by A.Bagaria, D.Kumaran, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.06 / 1.85
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	64.594, 69.761, 132.924, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 22.2

The binding sites of Magnesium atom in the Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp (pdb code 3hyo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp, PDB code: 3hyo:

Magnesium binding site 1 out of 1 in the Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg282 b:23.3 occ:1.00 O2B A:ADP281 2.1 37.9 1.0 O A:HOH522 2.1 32.7 1.0 O A:HOH382 2.1 23.7 1.0 O A:HOH346 2.2 22.9 1.0 O A:HOH318 2.2 18.5 1.0 O A:HOH307 2.2 33.5 1.0 O A:HOH446 2.9 30.9 1.0 PB A:ADP281 3.5 38.8 1.0 O1A A:ADP281 3.8 41.5 1.0 OD2 A:ASP105 3.9 20.4 1.0 OD1 A:ASP105 4.0 19.8 1.0 O A:HOH376 4.0 24.0 1.0 O3A A:ADP281 4.0 39.1 1.0 CA A:GLY212 4.2 11.6 1.0 O A:HOH441 4.3 33.1 1.0 O1B A:ADP281 4.3 36.8 1.0 OE1 A:GLU142 4.4 20.7 1.0 CG A:ASP105 4.4 17.6 1.0 O3B A:ADP281 4.4 37.4 1.0 OG1 A:THR177 4.5 19.5 1.0 PA A:ADP281 4.5 42.3 1.0 O A:LEU137 4.5 16.4 1.0 O A:HOH502 4.6 31.2 1.0 ND2 A:ASN139 4.8 26.0 1.0 CB A:ASN139 4.9 21.6 1.0 OE2 A:GLU142 4.9 18.5 1.0 N A:ASN139 5.0 19.5 1.0 C A:GLY212 5.0 10.8 1.0

A.Bagaria, D.Kumaran, S.K.Burley, S.Swaminathan. Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Adp To Be Published.