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Magnesium in PDB 3i6b: Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate
Enzymatic activity of Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate
All present enzymatic activity of Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate:
3.1.3.45;
3.1.3.45;
Protein crystallography data
The structure of Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate, PDB code: 3i6b
was solved by
T.Biswas,
O.V.Tsodikov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.00 / 2.49 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 64.964, 144.104, 145.854, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20 / 23.8 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate
(pdb code 3i6b). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate, PDB code: 3i6b:
Jump to Magnesium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate, PDB code: 3i6b:
Jump to Magnesium binding site number: 1; 2; 3; 4;
Magnesium binding site 1 out of 4 in 3i6b
Go back to
Magnesium Binding Sites List in 3i6b
Magnesium binding site 1 out
of 4 in the Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate within 5.0Å range:
|
Magnesium binding site 2 out of 4 in 3i6b
Go back to
Magnesium Binding Sites List in 3i6b
Magnesium binding site 2 out
of 4 in the Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate within 5.0Å range:
|
Magnesium binding site 3 out of 4 in 3i6b
Go back to
Magnesium Binding Sites List in 3i6b
Magnesium binding site 3 out
of 4 in the Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate within 5.0Å range:
|
Magnesium binding site 4 out of 4 in 3i6b
Go back to
Magnesium Binding Sites List in 3i6b
Magnesium binding site 4 out
of 4 in the Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Yrbi Lacking the Last 8 Residues, in Complex with Kdo and Inorganic Phosphate within 5.0Å range:
|
Reference:
T.Biswas,
L.Yi,
P.Aggarwal,
J.Wu,
J.R.Rubin,
J.A.Stuckey,
R.W.Woodard,
O.V.Tsodikov.
The Tail of Kdsc: Conformational Changes Control the Activity of A Haloacid Dehalogenase Superfamily Phosphatase. J.Biol.Chem. V. 284 30594 2009.
ISSN: ISSN 0021-9258
PubMed: 19726684
DOI: 10.1074/JBC.M109.012278
Page generated: Sun Aug 10 22:28:38 2025
ISSN: ISSN 0021-9258
PubMed: 19726684
DOI: 10.1074/JBC.M109.012278
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