Magnesium in PDB 3jam: Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast

The structure of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80;

Binding sites:

The binding sites of Magnesium atom in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast (pdb code 3jam). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 80 binding sites of Magnesium where determined in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast, PDB code: 3jam:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1801 b:28.5 occ:1.00 OP1 2:G361 2.0 33.1 1.0 P 2:G361 3.3 32.9 1.0 O5' 2:G361 3.8 32.9 1.0 OP2 2:G361 4.0 33.0 1.0 O2' 2:A359 4.1 40.4 1.0 OP2 2:G362 4.3 32.0 1.0 N7 2:G376 4.4 35.1 1.0 OP1 2:A377 4.5 34.5 1.0 O3' 2:C360 4.5 33.0 1.0 OP2 2:G376 4.5 38.0 1.0 C8 2:G376 4.7 35.1 1.0 C5' 2:G361 5.0 32.4 1.0

Magnesium binding site 2 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1802 b:3.3 occ:1.00 OP1 2:G402 2.1 41.5 1.0 O6 2:G95 3.5 37.8 1.0 P 2:G402 3.6 41.4 1.0 O3' 2:C401 4.2 40.7 1.0 OP2 2:A93 4.2 42.0 1.0 NH2 E:ARG3 4.3 43.0 1.0 O5' 2:G402 4.4 42.2 1.0 O5' 2:C401 4.4 38.4 1.0 N7 2:G402 4.5 45.6 1.0 OP2 2:G402 4.6 41.5 1.0 C6 2:G95 4.6 37.8 1.0 C8 2:G402 4.7 45.5 1.0

Magnesium binding site 3 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1803 b:16.3 occ:1.00 OP2 2:A554 2.0 46.4 1.0 OP2 2:A555 2.4 47.6 1.0 OP1 2:G551 3.3 44.0 1.0 P 2:A554 3.4 46.7 1.0 O5' 2:A554 3.9 46.6 1.0 P 2:A555 3.9 47.4 1.0 O3' 2:C553 4.0 45.9 1.0 OP2 2:G552 4.1 43.4 1.0 N7 2:A555 4.1 48.5 1.0 P 2:G551 4.2 43.8 1.0 C8 2:A555 4.3 48.6 1.0 OP2 2:G551 4.4 43.8 1.0 O5' 2:A555 4.4 47.7 1.0 OP1 2:A554 4.5 46.8 1.0 C3' 2:A554 4.6 46.7 1.0 O2' 2:C553 4.6 45.5 1.0 O3' 2:A554 4.7 47.2 1.0 O5' 2:G551 4.7 44.1 1.0 OP1 2:A555 4.9 47.4 1.0

Magnesium binding site 4 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1804 b:2.0 occ:1.00 OP1 2:A100 2.3 35.1 1.0 P 2:A100 3.6 34.9 1.0 OP1 2:C360 4.0 36.5 1.0 OP2 2:A100 4.1 35.1 1.0 C3' 2:C99 4.2 34.1 1.0 O3' 2:C99 4.2 34.6 1.0 O2' 2:A43 4.3 43.2 1.0 C4' 2:U44 4.5 46.1 1.0 C5' 2:U44 4.6 45.1 1.0 OP2 2:C360 4.7 36.6 1.0 O4' 2:A377 4.7 36.3 1.0 O5' 2:A100 4.8 35.1 1.0 P 2:C360 4.9 36.4 1.0 C5' 2:C99 4.9 33.5 1.0 O4' 2:U44 5.0 46.0 1.0

Magnesium binding site 5 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1805 b:2.0 occ:1.00 OP2 2:A1024 2.1 35.5 1.0 P 2:A1024 3.3 35.4 1.0 OP1 2:A1024 3.8 35.4 1.0 OP1 2:G623 3.9 38.9 1.0 O5' 2:A1024 4.1 35.1 1.0 C5' 2:A1024 4.2 34.6 1.0 OP2 2:A1025 4.2 33.3 1.0 N7 2:A1026 4.3 31.8 1.0 OP1 2:A1025 4.3 33.5 1.0 OP2 2:G623 4.5 39.0 1.0 O3' 2:U1023 4.5 35.9 1.0 P 2:G623 4.6 38.8 1.0 P 2:A1025 4.8 33.4 1.0 C3' 2:U1023 4.9 36.4 1.0 N6 2:A1026 4.9 32.2 1.0

Magnesium binding site 6 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1806 b:2.0 occ:1.00 O6 2:G556 3.9 67.2 1.0 O6 2:G585 4.0 67.9 1.0 N6 2:A584 4.4 66.9 1.0 OP2 2:C582 4.4 55.4 1.0 N7 2:A584 4.7 66.4 1.0 N6 2:A549 4.8 44.9 1.0 N4 2:C586 4.9 67.6 1.0 N4 2:C558 5.0 68.4 1.0 C6 2:G556 5.0 66.5 1.0

Magnesium binding site 7 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1807 b:11.9 occ:1.00 OP2 2:C49 2.4 46.6 1.0 OP1 2:A424 3.4 39.4 1.0 P 2:C49 3.7 46.7 1.0 C5' 2:G387 4.0 42.2 1.0 N7 2:A424 4.1 35.3 1.0 C4' 2:G387 4.3 44.3 1.0 OP1 2:C49 4.3 46.9 1.0 O5' 2:C49 4.4 47.5 1.0 O4' 2:G387 4.5 45.1 1.0 C8 2:A424 4.7 35.4 1.0 P 2:A424 4.7 39.4 1.0 O3' 2:G48 4.9 46.9 1.0

Magnesium binding site 8 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1808 b:30.1 occ:1.00 OP2 2:A992 3.8 54.4 1.0 N7 2:G993 3.9 66.4 1.0 C8 2:G993 4.5 66.3 1.0 O2' 2:U1003 4.6 79.8 1.0 O3' 2:U1003 4.6 74.9 1.0 OP1 2:A992 4.7 54.6 1.0 P 2:A992 4.8 54.2 1.0 OP2 2:A1004 4.8 72.5 1.0 N7 2:A994 5.0 67.4 1.0 C5 2:G993 5.0 66.5 1.0

Magnesium binding site 9 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1809 b:2.5 occ:1.00 OP2 2:G1329 2.3 45.2 1.0 P 2:G1329 3.5 45.3 1.0 N3 2:C1418 3.8 54.4 1.0 OP1 2:A1328 4.0 44.6 1.0 O5' 2:G1329 4.0 46.0 1.0 N4 2:C1331 4.0 53.0 1.0 N7 2:A1330 4.1 52.5 1.0 OG D:SER160 4.1 65.8 1.0 OP2 2:A1328 4.1 44.2 1.0 OP1 2:G1329 4.3 45.4 1.0 N6 2:A1330 4.3 53.0 1.0 C4 2:C1331 4.3 52.9 1.0 O6 2:G1417 4.3 53.0 1.0 N3 2:C1331 4.4 53.0 1.0 N4 2:C1418 4.4 54.0 1.0 P 2:A1328 4.4 44.3 1.0 O2 2:C1418 4.5 54.7 1.0 C4 2:C1418 4.5 54.2 1.0 C2 2:C1418 4.5 54.6 1.0 N7 2:G1329 4.7 47.2 1.0 C8 2:G1329 4.7 47.3 1.0 O3' 2:A1328 4.8 45.0 1.0 O5' 2:A1328 4.8 44.4 1.0 N1 2:G1417 4.9 53.0 1.0 C5 2:A1330 4.9 52.6 1.0 C6 2:G1417 4.9 52.5 1.0

Magnesium binding site 10 out of 80 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1810 b:13.5 occ:1.00 OP2 2:A11 3.8 41.0 1.0 OP1 2:U8 3.9 42.3 1.0 OP2 2:G10 3.9 42.0 1.0 OP2 2:U9 4.0 43.1 1.0 C5 2:U9 4.2 42.5 1.0 C6 2:U9 4.4 42.4 1.0 OP1 2:A11 4.5 40.9 1.0 P 2:A11 4.6 40.9 1.0 O5' 2:U9 4.7 42.7 1.0 P 2:U9 4.9 42.9 1.0

J.L.Llacer, T.Hussain, L.Marler, C.E.Aitken, A.Thakur, J.R.Lorsch, A.G.Hinnebusch, V.Ramakrishnan. Conformational Differences Between Open and Closed States of the Eukaryotic Translation Initiation Complex. Mol.Cell V. 59 399 2015.
ISSN: ISSN 1097-2765
PubMed: 26212456
DOI: 10.1016/J.MOLCEL.2015.06.033