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Magnesium in PDB 3jul: Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate

Enzymatic activity of Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate

All present enzymatic activity of Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate:
2.7.1.144;

Protein crystallography data

The structure of Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate, PDB code: 3jul was solved by L.Satyanarayana, S.K.Burley, S.Swaminathan, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.78 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.307, 44.240, 79.116, 90.00, 104.65, 90.00
R / Rfree (%) 22.6 / 26.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate (pdb code 3jul). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate, PDB code: 3jul:

Magnesium binding site 1 out of 1 in 3jul

Go back to Magnesium Binding Sites List in 3jul
Magnesium binding site 1 out of 1 in the Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:42.6
occ:1.00
 O A:HOH396 2.5 23.6 1.0
O A:HOH395 2.5 33.4 1.0
O A:HOH380 3.0 30.3 1.0
OE1 A:GLU190 3.9 30.1 1.0
OE2 A:GLU190 4.0 29.2 1.0
O A:HOH393 4.2 27.1 1.0
OD1 A:ASP167 4.4 23.7 1.0
CD A:GLU190 4.4 29.1 1.0
O A:ASN168 4.4 24.0 1.0
O A:LYS185 4.5 23.0 1.0
ND2 A:ASN187 4.9 25.7 1.0
NZ A:LYS39 5.0 32.8 1.0
CB A:SER169 5.0 24.1 1.0

Reference:

L.Satyanarayana, S.K.Burley, S.Swaminathan. Crystal Structure of Listeria Innocua D-Tagatose-6-Phosphate Kinase Bound with Substrate To Be Published.
Page generated: Wed Aug 14 17:14:13 2024

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