Magnesium in PDB 3knc: Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc)

The structure of Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc), PDB code: 3knc was solved by M.Ovaere, L.Van Meervelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.30 / 2.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	41.919, 41.919, 68.444, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 23.2

The binding sites of Magnesium atom in the Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc) (pdb code 3knc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc), PDB code: 3knc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg100 b:59.2 occ:1.00 O A:HOH103 2.1 64.2 1.0 O A:HOH102 2.1 64.5 1.0 O A:HOH101 2.1 60.2 1.0 O A:HOH105 2.1 65.5 1.0 O A:HOH106 2.1 64.2 1.0 O A:HOH104 2.1 62.8 1.0 O A:HOH15 4.4 80.9 1.0 N4 A:XCR7 4.4 57.5 1.0 N7 A:XGR6 4.5 48.1 1.0 O6 A:XGR6 4.5 50.0 1.0 N7 A:XAR5 4.5 49.8 1.0 O A:HOH25 4.6 61.5 1.0 N6 A:XAR5 4.7 51.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Cena-Rna Hybrid Octamer Ce(Gcgtagcg) :R(Cgcuacgc) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg200 b:37.0 occ:0.50 O A:HOH204 2.2 42.1 0.5 O A:HOH201 2.2 42.8 0.5 O A:HOH206 2.2 43.1 0.5 O A:HOH205 2.2 39.3 0.5 O A:HOH202 2.2 40.6 0.5 O A:HOH203 2.2 40.5 0.5 O A:HOH24 3.8 72.9 1.0 N7 A:XGR8 4.2 55.2 1.0 O6 A:XGR8 4.4 61.7 1.0 OP2 A:XGR8 4.4 56.0 1.0 N4 A:XCR7 4.5 57.5 1.0 C5 A:XCR7 4.8 51.5 1.0 C4 A:XCR7 4.8 54.7 1.0 O A:HOH102 4.8 64.5 1.0

M.Ovaere, P.Herdewijn, L.Van Meervelt. The Crystal Structure of the Cena:Rna Hybrid Ce(Gcgtagcg):R(Cgcuacgc). Chemistry V. 17 7823 2011.
ISSN: ISSN 0947-6539
PubMed: 21618623
DOI: 10.1002/CHEM.201003594