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Magnesium in PDB 3ktc: Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution

Enzymatic activity of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution

All present enzymatic activity of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution:
5.3.1.5;

Protein crystallography data

The structure of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution, PDB code: 3ktc was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.32 / 1.54
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 79.653, 79.653, 194.406, 90.00, 90.00, 120.00
R / Rfree (%) 13.6 / 15.7

Other elements in 3ktc:

The structure of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution also contains other interesting chemical elements:

Iron (Fe) 6 atoms
Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution (pdb code 3ktc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution, PDB code: 3ktc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3ktc

Go back to Magnesium Binding Sites List in 3ktc
Magnesium binding site 1 out of 2 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg335

b:30.4
occ:1.00
O A:HOH511 2.0 23.6 1.0
O A:HOH528 2.3 24.8 1.0
O A:HOH531 2.9 25.3 1.0
O1 A:UNL338 3.6 18.6 0.5
O A:HOH599 3.8 29.6 1.0
O A:HOH367 4.0 15.8 1.0
O A:HOH385 4.1 17.1 1.0
O A:HOH584 4.2 44.2 1.0
O A:ASP297 4.3 22.3 0.7
O A:HOH400 4.3 18.2 0.5
O A:ASP297 4.5 23.7 0.3
O2 A:UNL338 4.6 20.0 0.5
OD1 A:ASP297 4.7 32.9 0.7
O3 A:UNL338 4.7 18.7 0.5

Magnesium binding site 2 out of 2 in 3ktc

Go back to Magnesium Binding Sites List in 3ktc
Magnesium binding site 2 out of 2 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg335

b:14.6
occ:0.50
O B:HOH402 2.1 16.4 1.0
O B:HOH405 2.2 16.4 0.5
O B:HOH363 2.2 14.7 0.5
O B:HOH434 2.4 17.6 1.0
O B:HOH484 4.1 21.1 1.0
OD2 B:ASP153 4.1 26.4 1.0
O B:HOH508 4.2 40.4 1.0
O B:HOH454 4.2 19.7 1.0
OD1 B:ASP153 4.2 24.7 1.0
O B:HOH671 4.5 30.4 1.0
CG B:ASP153 4.6 25.7 1.0
CB B:ASP149 4.7 24.6 1.0
OD2 B:ASP149 4.8 27.7 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Aug 14 18:16:16 2024

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