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Magnesium in PDB 3lxx: Crystal Structure of Human Gtpase Imap Family Member 4

Protein crystallography data

The structure of Crystal Structure of Human Gtpase Imap Family Member 4, PDB code: 3lxx was solved by Y.Shen, L.Nedyalkova, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, D.W.Andrews, H.Park, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.09 / 2.15
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 41.266, 102.663, 100.555, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 29.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Gtpase Imap Family Member 4 (pdb code 3lxx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Gtpase Imap Family Member 4, PDB code: 3lxx:

Magnesium binding site 1 out of 1 in 3lxx

Go back to Magnesium Binding Sites List in 3lxx
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Gtpase Imap Family Member 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Gtpase Imap Family Member 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:31.6
occ:1.00
O A:HOH245 2.0 31.0 1.0
O3B A:GDP401 2.1 25.4 1.0
OG A:SER44 2.1 23.5 1.0
O A:HOH244 2.1 26.4 1.0
OG1 A:THR66 2.2 39.0 1.0
O A:HOH243 2.3 31.5 1.0
CB A:SER44 3.2 25.7 1.0
CB A:THR66 3.2 42.1 1.0
PB A:GDP401 3.3 27.3 1.0
O1B A:GDP401 3.6 26.2 1.0
OD2 A:ASP85 3.9 27.6 1.0
N A:SER44 3.9 24.0 1.0
O A:HIS57 3.9 37.5 1.0
CG2 A:THR66 4.0 40.3 1.0
O1A A:GDP401 4.0 29.4 1.0
CA A:SER44 4.1 23.9 1.0
OD1 A:ASP85 4.3 28.6 1.0
O2B A:GDP401 4.3 23.8 1.0
O3A A:GDP401 4.4 26.6 1.0
O A:HOH251 4.5 37.0 1.0
CA A:THR66 4.5 44.6 1.0
PA A:GDP401 4.5 30.0 1.0
CG A:ASP85 4.6 26.2 1.0
N A:THR66 4.6 46.1 1.0
O2A A:GDP401 4.6 25.0 1.0
O A:THR86 4.8 26.4 1.0
CB A:LYS43 4.8 23.4 1.0
C A:HIS57 5.0 37.4 1.0

Reference:

Y.Shen, L.Nedyalkova, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, D.W.Andrews, H.Park. Crystal Structure of Human Gtpase Imap Family Member 4 To Be Published.
Page generated: Mon Aug 11 00:14:36 2025

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