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Magnesium in PDB 3m7i: Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion

Enzymatic activity of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion

All present enzymatic activity of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion:
2.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion, PDB code: 3m7i was solved by B.Nocek, M.Makowska-Grzyska, N.Maltseva, W.Anderson, A.Joachimiak, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.75
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 130.337, 70.955, 69.189, 90.00, 109.40, 90.00
R / Rfree (%) 16.7 / 21.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion (pdb code 3m7i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion, PDB code: 3m7i:

Magnesium binding site 1 out of 1 in 3m7i

Go back to Magnesium Binding Sites List in 3m7i
Magnesium binding site 1 out of 1 in the Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:26.8
occ:1.00
 O A:HOH787 2.1 29.4 1.0
O A:ILE184 2.2 28.5 1.0
O2A A:TPP5001 2.2 28.5 1.0
OD1 A:ASN182 2.2 28.1 1.0
OD2 A:ASP152 2.2 31.0 1.0
O2B A:TPP5001 2.2 31.1 1.0
CG A:ASN182 3.1 29.5 1.0
CG A:ASP152 3.2 29.4 1.0
PB A:TPP5001 3.3 30.1 1.0
PA A:TPP5001 3.4 29.9 1.0
C A:ILE184 3.4 26.9 1.0
ND2 A:ASN182 3.5 24.5 1.0
O3B A:TPP5001 3.7 33.2 1.0
O3A A:TPP5001 3.7 27.6 1.0
CB A:ASP152 3.7 27.7 1.0
N A:ILE184 3.9 27.5 1.0
N A:ASP152 4.1 25.4 1.0
CA A:ILE184 4.2 25.8 1.0
O1A A:TPP5001 4.3 28.0 1.0
OD1 A:ASP152 4.3 32.3 1.0
O A:HOH881 4.3 33.2 1.0
O7 A:TPP5001 4.4 34.7 1.0
N A:SER185 4.4 28.6 1.0
O A:ASP180 4.4 31.2 1.0
CB A:ASN182 4.5 26.1 1.0
CA A:ASP152 4.6 26.1 1.0
N A:ASN182 4.6 27.1 1.0
CB A:ILE184 4.7 26.1 1.0
N A:ASN183 4.7 28.4 1.0
CG2 A:VAL190 4.7 33.8 1.0
CA A:SER185 4.7 28.6 1.0
O1B A:TPP5001 4.7 32.6 1.0
CA A:ASN182 4.9 27.4 1.0
C A:ASN182 4.9 27.5 1.0
C A:ASN183 5.0 28.6 1.0

Reference:

B.Nocek, M.Makowska-Grzyska, N.Maltseva, W.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) and Magnesium Ion To Be Published.
Page generated: Mon Aug 11 00:30:01 2025

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