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Magnesium in PDB 3q5i: Crystal Structure of PBANKA_031420

Protein crystallography data

The structure of Crystal Structure of PBANKA_031420, PDB code: 3q5i was solved by A.K.Wernimont, A.Hutchinson, H.Sullivan, E.Panico, L.Crombet, D.Cossar, A.Hassani, M.Vedadi, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, R.Hui, A.M.Neculai, M.Amani, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.467, 107.138, 54.303, 90.00, 108.21, 90.00
R / Rfree (%) 19.4 / 25

Other elements in 3q5i:

The structure of Crystal Structure of PBANKA_031420 also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of PBANKA_031420 (pdb code 3q5i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of PBANKA_031420, PDB code: 3q5i:

Magnesium binding site 1 out of 1 in 3q5i

Go back to Magnesium Binding Sites List in 3q5i
Magnesium binding site 1 out of 1 in the Crystal Structure of PBANKA_031420


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of PBANKA_031420 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg529

b:28.6
occ:1.00
O1B A:ANP1634 2.1 40.2 0.8
OD2 A:ASP211 2.5 14.5 1.0
O A:HOH553 2.5 4.5 1.0
OD1 A:ASP211 2.6 13.5 1.0
CG A:ASP211 2.9 8.2 1.0
PB A:ANP1634 3.6 44.2 0.8
O A:HOH531 3.7 20.1 1.0
CA A:CA528 4.3 29.1 1.0
CB A:ASP211 4.4 2.0 1.0
OD2 A:ASP190 4.4 3.7 1.0
O3A A:ANP1634 4.5 45.3 0.6
O2B A:ANP1634 4.5 43.8 0.6
N3B A:ANP1634 4.5 43.3 0.8
CA A:GLY213 4.5 2.0 1.0
N A:GLY213 4.7 2.0 1.0
CG A:LEU214 4.7 3.3 1.0
N A:LEU214 4.9 2.1 1.0

Reference:

A.K.Wernimont, A.Hutchinson, H.Sullivan, E.Panico, L.Crombet, D.Cossar, A.Hassani, M.Vedadi, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, R.Hui, A.M.Neculai, M.Amani. Crystal Structure of CDPK1 From Plasmodium Bergheii, PBANKA_031420 To Be Published.
Page generated: Thu Aug 15 09:56:15 2024

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