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Magnesium in PDB 3qbm: Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution, PDB code: 3qbm was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.25 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.335, 106.449, 45.577, 90.00, 110.94, 90.00
R / Rfree (%) 16.5 / 21.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution (pdb code 3qbm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution, PDB code: 3qbm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3qbm

Go back to Magnesium Binding Sites List in 3qbm
Magnesium binding site 1 out of 2 in the Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg200

b:16.7
occ:1.00
O B:HOH241 2.0 14.1 1.0
O A:ILE110 2.0 15.2 1.0
O A:HOH238 2.1 12.2 1.0
O A:HOH240 2.1 17.1 1.0
OD1 A:ASP113 2.2 18.2 1.0
O B:HOH239 2.3 15.6 1.0
CG A:ASP113 3.2 19.1 1.0
C A:ILE110 3.2 15.6 1.0
OD2 A:ASP113 3.5 16.9 1.0
OD2 A:ASP114 4.0 23.0 1.0
CA A:ILE110 4.0 14.4 1.0
O B:VAL21 4.0 17.7 1.0
O B:GLY101 4.1 15.7 1.0
O B:ASN20 4.2 18.3 1.0
O A:GLU111 4.2 15.1 1.0
O B:HOH242 4.2 31.9 1.0
N A:GLU111 4.2 16.3 1.0
OD1 B:ASN107 4.3 14.5 1.0
CG2 A:ILE110 4.3 15.9 1.0
C A:GLU111 4.4 15.5 1.0
N A:ASP114 4.4 16.9 1.0
CA A:GLU111 4.4 17.4 1.0
ND2 B:ASN107 4.4 13.6 1.0
CG B:ASN107 4.5 14.0 1.0
CB A:ASP113 4.5 15.6 1.0
N A:ASP113 4.6 17.6 1.0
O B:HOH454 4.6 35.2 1.0
O A:ALA109 4.6 13.6 1.0
CB A:ASP114 4.7 16.6 1.0
CB A:ILE110 4.7 13.9 1.0
CG A:ASP114 4.8 21.8 1.0
C B:VAL21 4.9 17.7 1.0
CA A:ASP113 4.9 16.8 1.0
CA B:VAL21 4.9 15.7 1.0

Magnesium binding site 2 out of 2 in 3qbm

Go back to Magnesium Binding Sites List in 3qbm
Magnesium binding site 2 out of 2 in the Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Tetr Transcriptional Regulator (CAUR_2221) From Chloroflexus Aurantiacus J-10-Fl at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:16.3
occ:1.00
OD1 B:ASP113 2.0 16.9 1.0
O B:ILE110 2.0 17.4 1.0
O B:HOH311 2.1 16.8 1.0
O B:HOH314 2.1 16.7 1.0
O A:HOH312 2.1 13.5 1.0
O A:HOH313 2.1 15.7 1.0
CG B:ASP113 3.0 18.7 1.0
C B:ILE110 3.2 17.2 1.0
OD2 B:ASP113 3.3 20.0 1.0
CA B:ILE110 4.0 16.9 1.0
OD2 B:ASP114 4.0 24.0 1.0
O A:VAL21 4.1 21.3 1.0
O A:GLY101 4.1 21.9 1.0
O A:ASN20 4.2 20.0 1.0
O B:GLU111 4.2 21.4 1.0
N B:GLU111 4.3 15.9 1.0
N B:ASP114 4.3 18.9 1.0
CG2 B:ILE110 4.3 14.8 1.0
OD1 A:ASN107 4.3 15.1 1.0
O A:HOH329 4.3 31.6 1.0
ND2 A:ASN107 4.3 17.5 1.0
CB B:ASP113 4.4 15.7 1.0
C B:GLU111 4.4 19.1 1.0
CG A:ASN107 4.5 12.9 1.0
CB B:ASP114 4.5 18.4 1.0
CA B:GLU111 4.5 17.7 1.0
N B:ASP113 4.5 15.6 1.0
O B:ALA109 4.6 15.4 1.0
CG B:ASP114 4.7 23.0 1.0
O A:HOH328 4.7 36.2 1.0
CB B:ILE110 4.8 13.6 1.0
CA B:ASP113 4.8 16.4 1.0
C A:VAL21 4.9 21.5 1.0
CA A:VAL21 4.9 18.9 1.0
C B:ASP113 5.0 17.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Aug 15 10:01:30 2024

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