Atomistry » Magnesium » PDB 3rvb-3s8c » 3s47
Atomistry »
  Magnesium »
    PDB 3rvb-3s8c »
      3s47 »

Magnesium in PDB 3s47: Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg

Protein crystallography data

The structure of Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg, PDB code: 3s47 was solved by A.A.Fedorov, E.V.Fedorov, D.Wichelecki, J.A.Gerlt, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.76 / 1.70
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 111.259, 111.259, 139.803, 90.00, 90.00, 90.00
R / Rfree (%) 24.3 / 28.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg (pdb code 3s47). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg, PDB code: 3s47:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3s47

Go back to Magnesium Binding Sites List in 3s47
Magnesium binding site 1 out of 2 in the Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:45.9
occ:1.00
OE1 A:GLU259 2.3 29.4 1.0
OD2 A:ASP207 2.4 29.2 1.0
O A:HOH551 2.4 35.7 1.0
O A:HOH432 2.7 33.9 1.0
OE2 A:GLU233 2.7 39.5 1.0
CD A:GLU233 3.2 32.1 1.0
CD A:GLU259 3.2 35.3 1.0
OE1 A:GLU233 3.4 29.3 1.0
CG A:ASP207 3.4 29.1 1.0
OE2 A:GLU259 3.5 27.2 1.0
NH1 A:ARG280 3.6 37.2 1.0
O A:HOH498 3.7 29.4 1.0
OD1 A:ASP207 3.9 29.6 1.0
NE2 A:HIS309 4.0 35.8 1.0
CD2 A:HIS309 4.1 37.3 1.0
CG A:GLU233 4.2 27.4 1.0
CD2 A:HIS209 4.4 42.4 1.0
CG A:GLU259 4.6 37.6 1.0
CB A:ASP207 4.6 25.0 1.0
O A:HOH427 4.6 32.3 1.0
CZ A:ARG280 4.8 41.1 1.0
NE2 A:HIS209 4.9 40.8 1.0
OD2 A:ASP234 5.0 42.6 1.0
CE1 A:HIS309 5.0 33.3 1.0

Magnesium binding site 2 out of 2 in 3s47

Go back to Magnesium Binding Sites List in 3s47
Magnesium binding site 2 out of 2 in the Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:32.5
occ:1.00
OD2 B:ASP207 2.2 36.7 1.0
OE1 B:GLU259 2.2 27.2 1.0
O B:HOH565 2.4 36.8 1.0
O B:HOH434 2.4 33.0 1.0
O B:HOH566 2.5 48.9 1.0
OE2 B:GLU233 2.7 41.0 1.0
CD B:GLU233 3.0 36.8 1.0
CG B:ASP207 3.2 35.8 1.0
CD B:GLU259 3.2 37.6 1.0
OE1 B:GLU233 3.4 30.0 1.0
OE2 B:GLU259 3.5 34.8 1.0
OD1 B:ASP207 3.5 26.8 1.0
CG B:GLU233 3.8 28.2 1.0
NH1 B:ARG280 3.9 29.4 1.0
O B:HOH481 4.0 36.6 1.0
CD2 B:HIS209 4.4 40.9 1.0
CB B:ASP207 4.4 34.2 1.0
O B:HOH529 4.5 44.4 1.0
NE2 B:HIS309 4.5 35.0 1.0
CG B:GLU259 4.5 29.7 1.0
O B:HOH406 4.5 25.1 1.0
CD2 B:HIS309 4.6 35.2 1.0
NE2 B:HIS209 4.9 39.5 1.0
CZ B:ARG280 4.9 33.9 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, D.Wichelecki, J.A.Gerlt, S.C.Almo. Crystal Structure of Enolase Superfamily Member From Clostridium Beijerincki Complexed with Mg To Be Published.
Page generated: Thu Aug 15 10:45:38 2024

Last articles

Fe in 6G7R
Fe in 6G72
Fe in 6G7M
Fe in 6G74
Fe in 6G7Q
Fe in 6G7P
Fe in 6G7N
Fe in 6G71
Fe in 6G2J
Fe in 6G5Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy