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Magnesium in PDB 3s7z: Crystal Structure of Putative Aspartate Racemase From Salmonella Typhimurium Complexed with Succinate

Protein crystallography data

The structure of Crystal Structure of Putative Aspartate Racemase From Salmonella Typhimurium Complexed with Succinate, PDB code: 3s7z was solved by N.Maltseva, R.Zhang, K.Kwon, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.07 / 2.00
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 84.826, 84.826, 114.127, 90.00, 90.00, 120.00
R / Rfree (%) 14.8 / 18.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Putative Aspartate Racemase From Salmonella Typhimurium Complexed with Succinate (pdb code 3s7z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Putative Aspartate Racemase From Salmonella Typhimurium Complexed with Succinate, PDB code: 3s7z:

Magnesium binding site 1 out of 1 in 3s7z

Go back to Magnesium Binding Sites List in 3s7z
Magnesium binding site 1 out of 1 in the Crystal Structure of Putative Aspartate Racemase From Salmonella Typhimurium Complexed with Succinate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative Aspartate Racemase From Salmonella Typhimurium Complexed with Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg245

b:30.8
occ:1.00
O B:TRP229 2.3 19.9 1.0
O B:GLU227 2.4 14.4 1.0
O B:HOH291 2.4 25.5 1.0
O B:THR232 2.4 24.8 1.0
OG1 B:THR232 2.8 19.3 1.0
C B:THR232 3.2 27.0 1.0
C B:TRP229 3.4 20.8 1.0
C B:GLU227 3.4 16.4 1.0
N B:THR232 3.7 25.8 1.0
CA B:THR232 3.7 22.6 1.0
CB B:THR232 3.8 18.5 1.0
N B:TRP229 3.8 17.3 1.0
C B:SER228 4.0 19.3 0.7
CA B:TRP229 4.1 15.5 1.0
CA B:GLU227 4.2 14.9 1.0
C B:SER228 4.2 18.2 0.3
O B:SER228 4.3 15.7 0.7
N B:SER228 4.3 17.2 0.3
N B:SER228 4.4 13.4 0.7
N B:PRO230 4.4 27.2 1.0
CA B:SER228 4.5 17.9 0.3
CA B:SER228 4.6 18.0 0.7
C B:PRO230 4.6 27.3 1.0
CA B:PRO230 4.6 25.2 1.0
O B:TYR226 4.7 13.4 1.0
O B:SER228 4.8 16.1 0.3
CB B:TRP229 4.8 17.9 1.0
O B:PRO230 4.8 23.2 1.0
N B:ASP231 4.9 22.9 1.0
C B:ASP231 4.9 29.3 1.0
CG2 B:THR232 5.0 19.8 1.0
CB B:GLU227 5.0 14.9 1.0

Reference:

N.Maltseva, R.Zhang, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Putative Aspartate Racemase From Salmonella Typhimurium Complexed with Succinate. To Be Published.
Page generated: Thu Aug 15 10:47:37 2024

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