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Magnesium in PDB 3sjn: Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound

Protein crystallography data

The structure of Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound, PDB code: 3sjn was solved by Y.Patskovsky, J.Kim, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative(Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.90
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 109.207, 109.207, 141.034, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 17.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound (pdb code 3sjn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound, PDB code: 3sjn:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3sjn

Go back to Magnesium Binding Sites List in 3sjn
Magnesium binding site 1 out of 2 in the Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg374

b:40.4
occ:1.00
O A:HOH489 1.8 36.0 1.0
O A:HOH490 1.9 60.1 1.0
OE2 A:GLU225 2.1 43.3 1.0
OE1 A:GLU251 2.1 43.0 1.0
OD2 A:ASP198 2.2 48.2 1.0
O A:HOH377 2.2 53.1 1.0
CG A:ASP198 3.0 39.5 1.0
CD A:GLU225 3.1 33.4 1.0
CD A:GLU251 3.2 56.1 1.0
OD1 A:ASP198 3.3 41.9 1.0
OE2 A:GLU251 3.6 61.9 1.0
CG A:GLU225 3.8 28.1 1.0
O A:HOH378 4.0 45.3 1.0
OE1 A:GLU225 4.1 41.9 1.0
O A:HOH379 4.2 31.3 1.0
NZ A:LYS165 4.2 41.7 1.0
OE2 A:GLU226 4.2 65.1 1.0
CD2 A:HIS301 4.2 44.6 0.5
ND1 A:HIS301 4.3 51.3 0.5
CE1 A:HIS301 4.3 50.0 0.5
CB A:ASP198 4.4 38.4 1.0
CG A:GLU251 4.4 35.2 1.0
NE2 A:HIS301 4.5 41.0 0.5
CE A:LYS165 4.7 39.8 1.0
CG A:GLU226 4.9 60.3 1.0
CD A:GLU226 4.9 57.8 1.0
CB A:GLU225 4.9 42.1 1.0
CB A:GLU251 5.0 36.1 1.0

Magnesium binding site 2 out of 2 in 3sjn

Go back to Magnesium Binding Sites List in 3sjn
Magnesium binding site 2 out of 2 in the Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase SPEA_3858 (Target Efi-500646) From Shewanella Pealeana with Magnesium Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg374

b:43.0
occ:1.00
O B:HOH377 2.0 56.9 1.0
O B:HOH376 2.0 40.4 1.0
O B:HOH378 2.0 40.1 1.0
OD2 B:ASP198 2.1 50.7 1.0
OE1 B:GLU251 2.1 43.7 1.0
OE2 B:GLU225 2.2 42.6 1.0
CG B:ASP198 3.0 46.7 1.0
CD B:GLU251 3.1 53.9 1.0
CD B:GLU225 3.2 40.2 1.0
OD1 B:ASP198 3.4 42.8 1.0
OE2 B:GLU251 3.5 44.1 1.0
O B:HOH481 4.0 38.7 1.0
CG B:GLU225 4.0 35.5 1.0
CD2 B:HIS301 4.0 47.5 0.5
OE1 B:GLU225 4.1 45.0 1.0
NZ B:LYS165 4.1 44.8 1.0
CE1 B:HIS301 4.2 61.9 0.5
ND1 B:HIS301 4.2 56.4 0.5
CB B:ASP198 4.3 41.7 1.0
O B:HOH379 4.3 31.6 1.0
NE2 B:HIS301 4.3 50.1 0.5
CG B:GLU251 4.5 31.3 1.0
O B:HOH483 4.5 51.2 1.0
OE2 B:GLU226 4.7 63.0 1.0
CE B:LYS165 4.7 45.3 1.0

Reference:

Y.Patskovsky, J.Kim, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo. Crystal Structure of Enolase SPEA_3858 From Shewanella Pealeana To Be Published.
Page generated: Thu Aug 15 11:01:37 2024

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