Atomistry » Magnesium » PDB 3t2d-3tar » 3t8v
Atomistry »
  Magnesium »
    PDB 3t2d-3tar »
      3t8v »

Magnesium in PDB 3t8v: A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases

Protein crystallography data

The structure of A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases, PDB code: 3t8v was solved by S.Mcgowan, M.Klemba, D.C.Greebaum, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.04 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.542, 108.821, 118.274, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 19.8

Other elements in 3t8v:

The structure of A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases (pdb code 3t8v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases, PDB code: 3t8v:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3t8v

Go back to Magnesium Binding Sites List in 3t8v
Magnesium binding site 1 out of 3 in the A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1091

b:39.9
occ:1.00
O A:HOH1186 2.0 21.4 1.0
O A:HOH1187 2.1 25.0 1.0
O A:HOH1185 2.2 30.6 1.0
O A:HOH1184 2.3 25.5 1.0
O A:HOH1188 2.3 55.4 1.0
OE2 A:GLU957 3.6 18.1 1.0
O A:HOH1465 3.9 28.3 1.0
O A:HOH1254 4.0 43.8 1.0
ND2 A:ASN992 4.2 17.7 1.0
O A:HOH1128 4.3 23.2 1.0
OD2 A:ASP995 4.3 14.7 1.0
CD A:GLU957 4.4 20.4 1.0
O A:HOH1097 4.5 28.0 1.0
CG A:GLU957 4.6 20.2 1.0
O A:HOH7 4.6 15.3 1.0
O A:HOH1890 4.7 50.3 1.0
CE A:LYS311 4.8 22.4 1.0

Magnesium binding site 2 out of 3 in 3t8v

Go back to Magnesium Binding Sites List in 3t8v
Magnesium binding site 2 out of 3 in the A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2

b:23.8
occ:1.00
O A:GLY250 2.0 17.0 1.0
O A:HOH1176 2.0 21.4 1.0
O A:HOH1175 2.0 28.6 1.0
O A:HOH1177 2.1 19.0 1.0
O A:HOH1174 2.1 15.0 1.0
O A:HOH130 2.2 17.9 1.0
C A:GLY250 3.1 18.1 1.0
CA A:GLY250 3.8 14.7 1.0
O A:HOH1120 4.2 26.0 1.0
O A:HOH1118 4.2 14.2 1.0
O A:HOH1119 4.2 29.9 1.0
N A:LEU251 4.2 15.0 1.0
ND1 A:HIS297 4.3 19.9 1.0
O A:ILE295 4.5 16.5 1.0
CA A:LEU251 4.6 13.4 1.0
O A:HOH1178 4.6 13.1 1.0
CA A:ILE296 4.8 11.9 1.0
C A:LEU251 4.9 18.4 1.0
N A:LYS252 4.9 15.0 1.0
CE1 A:HIS297 4.9 20.1 1.0

Magnesium binding site 3 out of 3 in 3t8v

Go back to Magnesium Binding Sites List in 3t8v
Magnesium binding site 3 out of 3 in the A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg3

b:34.9
occ:1.00
O A:HOH1182 2.0 26.3 1.0
O A:HOH1183 2.1 34.4 1.0
O A:HOH1181 2.2 17.9 1.0
O A:HOH1220 2.3 33.1 1.0
O A:HOH1814 2.4 35.5 1.0
O A:HOH1382 2.4 28.1 1.0
OD1 A:ASP438 4.0 20.9 1.0
O A:HOH1495 4.0 21.8 1.0
OD2 A:ASP438 4.3 26.0 1.0
OH A:TYR399 4.4 20.4 1.0
OE1 A:GLU437 4.4 16.0 1.0
CB A:ALA434 4.4 14.2 1.0
CG A:ASP438 4.6 19.4 1.0
CD A:LYS402 4.7 24.0 1.0
CA A:ALA434 4.9 13.6 1.0

Reference:

M.B.Harbut, G.Velmourougane, S.Dalal, G.Reiss, J.C.Whisstock, O.Onder, D.Brisson, S.Mcgowan, M.Klemba, D.C.Greenbaum. Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- and M17-Family Aminopeptidases Proc.Natl.Acad.Sci.Usa V. 108 E526 2011.
ISSN: ISSN 0027-8424
PubMed: 21844374
DOI: 10.1073/PNAS.1105601108
Page generated: Thu Aug 15 11:57:33 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy