Atomistry » Magnesium » PDB 3tav-3tnf » 3tji
Atomistry »
  Magnesium »
    PDB 3tav-3tnf »
      3tji »

Magnesium in PDB 3tji: Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg

Protein crystallography data

The structure of Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg, PDB code: 3tji was solved by M.W.Vetting, R.Toro, R.Bhosle, S.R.Wasserman, L.L.Morisco, B.Hillerich, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative(Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 128.80 / 1.80
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 182.150, 182.150, 104.800, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 28.2

Other elements in 3tji:

The structure of Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg (pdb code 3tji). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg, PDB code: 3tji:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 3tji

Go back to Magnesium Binding Sites List in 3tji
Magnesium binding site 1 out of 4 in the Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:12.7
occ:1.00
OE2 A:GLU231 2.1 14.0 1.0
OE1 A:GLU257 2.1 6.9 1.0
O A:HOH460 2.1 5.4 1.0
O A:HOH461 2.1 5.7 1.0
O A:HOH436 2.1 9.4 1.0
OD2 A:ASP205 2.2 9.4 1.0
CD A:GLU257 2.9 9.9 1.0
CD A:GLU231 3.1 13.2 1.0
OE2 A:GLU257 3.2 8.4 1.0
CG A:ASP205 3.2 8.0 1.0
OD1 A:ASP205 3.6 7.7 1.0
OE1 A:GLU231 3.8 11.8 1.0
NH2 A:ARG278 3.8 11.5 1.0
O A:HOH682 4.1 8.0 1.0
CG A:GLU231 4.1 10.6 1.0
O A:HOH410 4.1 3.5 1.0
O A:HOH531 4.1 7.0 1.0
O A:HOH511 4.2 10.4 1.0
CG A:GLU257 4.3 7.1 1.0
CD2 A:HIS207 4.3 14.4 1.0
O A:HOH620 4.4 17.6 1.0
NE2 A:HIS307 4.4 11.2 1.0
OD2 A:ASP232 4.5 15.1 1.0
CB A:ASP205 4.5 8.3 1.0
CD2 A:HIS307 4.7 10.6 1.0
CZ A:ARG278 4.8 14.6 1.0
NE A:ARG278 4.9 15.2 1.0
NE2 A:HIS207 4.9 16.4 1.0
CB A:GLU257 4.9 8.3 1.0
CG A:ASP232 5.0 11.8 1.0
OH C:TYR79 5.0 12.2 1.0

Magnesium binding site 2 out of 4 in 3tji

Go back to Magnesium Binding Sites List in 3tji
Magnesium binding site 2 out of 4 in the Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:12.4
occ:1.00
O B:HOH542 2.0 5.9 1.0
OE1 B:GLU257 2.1 7.0 1.0
OE2 B:GLU231 2.1 13.5 1.0
O B:HOH473 2.1 8.4 1.0
OD2 B:ASP205 2.1 9.0 1.0
O B:HOH412 2.2 5.4 1.0
CD B:GLU257 2.9 9.2 1.0
CG B:ASP205 3.1 9.1 1.0
CD B:GLU231 3.1 11.6 1.0
OE2 B:GLU257 3.2 9.1 1.0
OD1 B:ASP205 3.5 7.9 1.0
OE1 B:GLU231 3.8 11.5 1.0
NH2 B:ARG278 3.9 13.4 1.0
O B:HOH463 4.0 4.8 1.0
CG B:GLU231 4.1 9.8 1.0
O B:HOH462 4.1 8.4 1.0
O B:HOH441 4.2 6.7 1.0
CG B:GLU257 4.3 8.0 1.0
CD2 B:HIS207 4.3 14.1 1.0
OD2 B:ASP232 4.3 16.3 1.0
O B:HOH541 4.4 9.7 1.0
CB B:ASP205 4.4 8.5 1.0
O B:HOH573 4.5 15.4 1.0
NE2 B:HIS307 4.5 9.8 1.0
CD2 B:HIS307 4.7 9.1 1.0
CG B:ASP232 4.9 12.9 1.0
NE2 B:HIS207 4.9 15.4 1.0
CZ B:ARG278 4.9 14.7 1.0
OH D:TYR79 4.9 12.6 1.0
CB B:GLU257 5.0 9.0 1.0

Magnesium binding site 3 out of 4 in 3tji

Go back to Magnesium Binding Sites List in 3tji
Magnesium binding site 3 out of 4 in the Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:11.1
occ:1.00
O C:HOH405 1.9 6.9 1.0
OE1 C:GLU257 2.1 8.8 1.0
O C:HOH458 2.1 2.0 1.0
OD2 C:ASP205 2.2 11.0 1.0
OE2 C:GLU231 2.2 12.6 1.0
O C:HOH438 2.2 8.4 1.0
CD C:GLU257 3.0 10.4 1.0
CG C:ASP205 3.1 8.6 1.0
CD C:GLU231 3.1 12.9 1.0
OE2 C:GLU257 3.2 10.0 1.0
OD1 C:ASP205 3.5 9.4 1.0
O C:HOH459 3.7 9.2 1.0
OE1 C:GLU231 3.7 12.5 1.0
NH2 C:ARG278 3.9 11.9 1.0
O C:HOH417 4.2 3.2 1.0
CG C:GLU231 4.2 10.3 1.0
O C:HOH587 4.2 11.5 1.0
CD2 C:HIS207 4.2 13.5 1.0
O C:HOH614 4.3 15.2 1.0
O C:HOH498 4.3 16.5 1.0
CG C:GLU257 4.3 8.2 1.0
CB C:ASP205 4.4 8.4 1.0
NE2 C:HIS307 4.6 13.1 1.0
OD2 C:ASP232 4.7 15.3 1.0
NE2 C:HIS207 4.8 15.4 1.0
CD2 C:HIS307 4.8 12.0 1.0
CZ C:ARG278 4.9 14.8 1.0
CB C:GLU257 4.9 8.6 1.0
OH A:TYR79 4.9 11.8 1.0
NE C:ARG278 5.0 16.2 1.0

Magnesium binding site 4 out of 4 in 3tji

Go back to Magnesium Binding Sites List in 3tji
Magnesium binding site 4 out of 4 in the Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Bound Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:10.7
occ:1.00
O D:HOH437 2.1 8.9 1.0
OD2 D:ASP205 2.1 9.8 1.0
OE1 D:GLU257 2.1 8.9 1.0
O D:HOH546 2.1 2.0 1.0
O D:HOH426 2.1 7.1 1.0
OE2 D:GLU231 2.2 13.5 1.0
CD D:GLU257 3.0 8.7 1.0
CG D:ASP205 3.1 9.8 1.0
CD D:GLU231 3.2 12.8 1.0
OE2 D:GLU257 3.3 10.3 1.0
OD1 D:ASP205 3.4 9.9 1.0
OE1 D:GLU231 3.8 14.4 1.0
NH2 D:ARG278 3.9 14.8 1.0
O D:HOH458 3.9 6.9 1.0
O D:HOH560 4.0 6.7 1.0
CG D:GLU231 4.2 10.4 1.0
O D:HOH435 4.2 5.4 1.0
CD2 D:HIS207 4.2 12.5 1.0
O D:HOH745 4.3 10.3 1.0
CG D:GLU257 4.3 8.6 1.0
CB D:ASP205 4.4 8.6 1.0
O D:HOH504 4.4 20.0 1.0
NE2 D:HIS307 4.6 10.0 1.0
OD2 D:ASP232 4.7 14.1 1.0
CD2 D:HIS307 4.8 8.8 1.0
NE2 D:HIS207 4.8 14.1 1.0
OH B:TYR79 4.9 10.6 1.0
CZ D:ARG278 4.9 14.4 1.0
CB D:GLU257 5.0 8.6 1.0
CG D:ASP232 5.0 10.5 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, S.R.Wasserman, L.L.Morisco, B.Hillerich, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of An Enolase From Enterobacter Sp. 638 (Efi Target Efi-501662) with Boung Mg To Be Published.
Page generated: Thu Aug 15 12:09:00 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy