Magnesium in PDB 3tvd: Crystal Structure of Mouse Rhoa-Gtp Complex

The structure of Crystal Structure of Mouse Rhoa-Gtp Complex, PDB code: 3tvd was solved by K.Swaminathan, K.Pal, C.Jobichen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.99
Space group	C 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	80.813, 122.652, 91.276, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 28.2

The binding sites of Magnesium atom in the Crystal Structure of Mouse Rhoa-Gtp Complex (pdb code 3tvd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mouse Rhoa-Gtp Complex, PDB code: 3tvd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Mouse Rhoa-Gtp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mouse Rhoa-Gtp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg300 b:30.5 occ:1.00 NZ A:LYS18 3.0 25.1 1.0 CA A:GLY14 3.3 29.4 1.0 S1G A:GSP538 3.4 82.1 1.0 N A:GLY14 3.8 25.7 1.0 CA A:ALA61 3.9 30.0 1.0 N A:GLY62 3.9 46.6 1.0 O1B A:GSP538 4.0 26.8 1.0 CB A:ALA61 4.0 40.3 1.0 O3B A:GSP538 4.0 32.9 1.0 CE A:LYS18 4.1 27.5 1.0 O A:ASP13 4.1 22.6 1.0 C A:ASP13 4.1 25.4 1.0 O A:GLY12 4.1 25.5 1.0 OE1 A:GLN63 4.2 90.0 1.0 PG A:GSP538 4.3 79.7 1.0 N A:ALA15 4.4 30.5 1.0 C A:GLY14 4.4 25.8 1.0 C A:ALA61 4.4 45.2 1.0 O3G A:GSP538 4.5 31.4 1.0 O A:THR60 4.5 26.4 1.0 PB A:GSP538 4.7 17.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Mouse Rhoa-Gtp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mouse Rhoa-Gtp Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg300 b:37.7 occ:1.00 O B:HOH200 2.8 25.0 1.0 NZ B:LYS18 3.0 23.3 1.0 O3G B:GSP538 3.2 41.2 1.0 CA B:ALA61 3.3 33.3 1.0 N B:GLY62 3.4 49.8 1.0 CB B:ALA61 3.7 42.0 1.0 CA B:GLY14 3.8 32.7 1.0 CE B:LYS18 3.8 25.3 1.0 C B:ALA61 3.8 45.6 1.0 O B:GLY12 3.9 24.0 1.0 N B:GLY14 4.1 26.3 1.0 O B:THR60 4.1 22.5 1.0 O B:ASP13 4.2 23.7 1.0 C B:ASP13 4.3 25.1 1.0 N B:ALA61 4.4 35.4 1.0 O1B B:GSP538 4.5 16.4 1.0 CA B:GLY62 4.5 50.5 1.0 OE1 B:GLN63 4.6 87.0 1.0 C B:THR60 4.7 24.9 1.0 O B:HOH194 4.7 18.9 1.0 PG B:GSP538 4.7 50.4 1.0 O2B B:GSP538 4.9 28.2 1.0 C B:GLY14 4.9 25.1 1.0 N B:ALA15 4.9 29.6 1.0 C B:GLY62 4.9 62.7 1.0 O B:GLY62 5.0 70.4 1.0

C.Jobichen, K.Pal, K.Swaminathan. Crystal Structure of Mouse Rhoa:Gtpgammas Complex in A Centered Lattice. J.Struct.Funct.Genom. V. 13 241 2012.
ISSN: ISSN 1345-711X
PubMed: 23001747
DOI: 10.1007/S10969-012-9143-5