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Magnesium in PDB 3v4b: Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate

Protein crystallography data

The structure of Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate, PDB code: 3v4b was solved by M.W.Vetting, R.Toro, R.Bhosle, S.R.Wasserman, L.L.Morisco, S.Sojitra, R.D.Seidel, B.Hillerich, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, N.Al Obaidi, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.14 / 1.40
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 124.715, 124.715, 110.871, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 16.2

Other elements in 3v4b:

The structure of Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate (pdb code 3v4b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate, PDB code: 3v4b:

Magnesium binding site 1 out of 1 in 3v4b

Go back to Magnesium Binding Sites List in 3v4b
Magnesium binding site 1 out of 1 in the Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:7.7
occ:1.00
OE2 A:GLU236 2.0 7.9 1.0
OD2 A:ASP210 2.1 7.7 1.0
O A:HOH409 2.1 7.9 1.0
O4 A:TLA404 2.1 6.3 0.8
OE1 A:GLU262 2.1 7.8 1.0
O3 A:TLA404 2.2 6.7 0.8
C4 A:TLA404 2.9 8.3 0.8
C3 A:TLA404 3.0 10.4 0.8
CG A:ASP210 3.0 7.2 1.0
CD A:GLU262 3.1 6.9 1.0
CD A:GLU236 3.1 6.9 1.0
OE2 A:GLU262 3.3 8.7 1.0
OD1 A:ASP210 3.4 7.3 1.0
NH2 A:ARG283 3.8 7.4 1.0
OE1 A:GLU236 3.9 8.0 1.0
O A:HOH480 4.0 8.8 1.0
CG A:GLU236 4.0 7.1 1.0
OD2 A:ASP237 4.1 7.4 1.0
CD2 A:HIS212 4.1 12.5 1.0
O2 A:TLA404 4.2 19.9 0.8
O41 A:TLA404 4.2 9.6 0.8
O A:HOH473 4.2 6.9 1.0
C2 A:TLA404 4.2 17.0 0.8
CB A:ASP210 4.3 8.0 1.0
CG A:GLU262 4.4 7.4 1.0
NH1 A:ARG147 4.5 27.0 1.0
NE2 A:HIS212 4.5 16.6 1.0
CG A:ASP237 4.7 6.8 1.0
CZ A:ARG283 4.8 6.7 1.0
NE A:ARG283 4.9 7.5 1.0
C1 A:TLA404 4.9 16.9 0.8

Reference:

M.W.Vetting, R.Toro, R.Bhosle, S.R.Wasserman, L.L.Morisco, S.Sojitra, R.D.Seidel, B.Hillerich, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, N.Obaidi, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo. Crystal Structure of An Enolase From the Soil Bacterium Cellvibrio Japonicus (Target Efi-502161) with Bound Mg and L-Tartrate To Be Published.
Page generated: Mon Aug 11 04:22:36 2025

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