Magnesium in PDB 3vmq: Crystal Structure of Staphylococcus Aureus Membrane-Bound Transglycosylase: Apoenzyme

The structure of Crystal Structure of Staphylococcus Aureus Membrane-Bound Transglycosylase: Apoenzyme, PDB code: 3vmq was solved by C.Y.Huang, H.W.Shih, L.Y.Lin, Y.W.Tien, T.J.R.Cheng, W.C.Cheng, C.H.Wong, C.Ma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.08 / 2.52
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.683, 67.406, 152.810, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 25.7

The binding sites of Magnesium atom in the Crystal Structure of Staphylococcus Aureus Membrane-Bound Transglycosylase: Apoenzyme (pdb code 3vmq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Staphylococcus Aureus Membrane-Bound Transglycosylase: Apoenzyme, PDB code: 3vmq:

Magnesium binding site 1 out of 1 in the Crystal Structure of Staphylococcus Aureus Membrane-Bound Transglycosylase: Apoenzyme


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Staphylococcus Aureus Membrane-Bound Transglycosylase: Apoenzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1 b:0.2 occ:1.00 OG1 A:THR115 2.3 0.1 1.0 OE1 A:GLN136 2.4 72.9 1.0 O A:GLY131 2.7 95.9 1.0 CD A:GLN136 3.5 64.4 1.0 N A:ASP111 3.6 65.7 1.0 N A:THR133 3.7 51.1 1.0 CB A:THR115 3.7 0.9 1.0 O A:HOH287 3.8 69.9 1.0 O A:ASP111 3.8 57.2 1.0 C A:GLY131 3.9 87.1 1.0 NE2 A:GLN136 4.0 72.7 1.0 CA A:SER132 4.1 63.0 1.0 CB A:THR133 4.2 43.5 1.0 CB A:ASP111 4.3 70.7 1.0 CA A:ASP111 4.3 63.5 1.0 C A:SER132 4.4 57.9 1.0 CD1 A:PHE110 4.4 96.2 1.0 C A:ASP111 4.4 73.0 1.0 CG2 A:THR115 4.4 0.8 1.0 N A:SER132 4.5 62.6 1.0 CA A:THR133 4.5 37.9 1.0 CA A:PHE110 4.6 66.2 1.0 CA A:THR115 4.6 97.6 1.0 C A:PHE110 4.6 67.5 1.0 CE1 A:PHE110 4.6 90.1 1.0 N A:THR115 4.8 99.5 1.0 CG A:PHE110 4.8 88.7 1.0 CG A:GLN136 4.8 48.6 1.0 CG2 A:THR133 4.9 29.3 1.0 O A:GLY109 4.9 57.0 1.0

C.Y.Huang, H.W.Shih, L.Y.Lin, Y.W.Tien, T.J.R.Cheng, W.C.Cheng, C.H.Wong, C.Ma. Crystal Structure of Staphylococcus Aureus Transglycosylase in Complex with A Lipid II Analog and Elucidation of Peptidoglycan Synthesis Mechanism Proc.Natl.Acad.Sci.Usa V. 109 6496 2012.
ISSN: ISSN 0027-8424
PubMed: 22493270
DOI: 10.1073/PNAS.1203900109