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Magnesium in PDB 3x25: Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min

Enzymatic activity of Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min

All present enzymatic activity of Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min:
4.2.1.84;

Protein crystallography data

The structure of Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min, PDB code: 3x25 was solved by Y.Yamanaka, K.Hashimoto, K.Noguchi, M.Yohda, M.Odaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.22 / 1.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.178, 60.002, 81.740, 90.00, 125.07, 90.00
R / Rfree (%) 14.9 / 17.3

Other elements in 3x25:

The structure of Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min (pdb code 3x25). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min, PDB code: 3x25:

Magnesium binding site 1 out of 1 in 3x25

Go back to Magnesium Binding Sites List in 3x25
Magnesium binding site 1 out of 1 in the Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nitrile Hydratase Mutant BR56K Complexed with Trimethylacetonitrile, Photo-Activated For 700 Min within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:13.8
occ:0.50
 O B:HOH402 2.4 17.1 1.0
O B:HOH465 4.1 20.9 1.0
O B:HOH519 4.3 25.1 1.0
O B:ASP6 4.4 13.6 1.0
OD2 B:ASP6 4.4 13.8 1.0
O B:HOH433 4.4 19.9 1.0
CB B:ALA144 4.5 15.1 1.0
O B:GLY3 4.5 12.5 1.0
O B:ASP2 4.5 13.2 1.0
CB B:ASP6 4.5 12.7 1.0
CB B:ASP2 4.6 13.6 1.0
C B:ASP2 4.6 12.7 1.0
OD1 B:ASP2 4.7 16.1 1.0
CG B:ASP6 4.7 12.9 1.0
CA B:ASP2 4.7 13.2 1.0
CG B:ASP2 4.7 14.0 1.0

Reference:

Y.Yamanaka, Y.Kato, K.Hashimoto, K.Iida, K.Nagasawa, H.Nakayama, N.Dohmae, K.Noguchi, T.Noguchi, M.Yohda, M.Odaka. Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing A Role For the Cysteinesulfenic Acid Ligand As A Catalytic Nucleophile. Angew.Chem.Int.Ed.Engl. V. 54 10763 2015.
ISSN: ISSN 1433-7851
PubMed: 26333053
DOI: 10.1002/ANIE.201502731
Page generated: Thu Aug 15 13:49:38 2024

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