Magnesium in PDB 3zfd: Crystal Structure of the KIF4 Motor Domain Complexed with Mg-Amppnp

All present enzymatic activity of Crystal Structure of the KIF4 Motor Domain Complexed with Mg-Amppnp:
3.6.4.4;

The structure of Crystal Structure of the KIF4 Motor Domain Complexed with Mg-Amppnp, PDB code: 3zfd was solved by Q.Chang, R.Nitta, S.Inoue, N.Hirokawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.35 / 1.71
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.718, 62.718, 167.524, 90.00, 90.00, 90.00
R / Rfree (%)	16.614 / 19.483

The binding sites of Magnesium atom in the Crystal Structure of the KIF4 Motor Domain Complexed with Mg-Amppnp (pdb code 3zfd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the KIF4 Motor Domain Complexed with Mg-Amppnp, PDB code: 3zfd:

Magnesium binding site 1 out of 1 in the Crystal Structure of the KIF4 Motor Domain Complexed with Mg-Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the KIF4 Motor Domain Complexed with Mg-Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:7.4 occ:1.00 O1G A:ANP501 2.0 6.3 1.0 O2B A:ANP501 2.0 6.2 1.0 O A:HOH2082 2.1 5.9 1.0 OG A:SER211 2.1 6.6 1.0 O A:HOH2083 2.1 7.3 1.0 OG1 A:THR95 2.1 6.7 1.0 CB A:SER211 3.2 6.8 1.0 CB A:THR95 3.2 6.7 1.0 PG A:ANP501 3.2 6.8 1.0 PB A:ANP501 3.3 6.8 1.0 N3B A:ANP501 3.5 6.6 1.0 N A:SER211 3.7 6.9 1.0 N A:THR95 4.0 6.5 1.0 O3G A:ANP501 4.0 6.4 1.0 O A:HOH2081 4.0 8.6 1.0 CA A:SER211 4.0 7.1 1.0 O2A A:ANP501 4.1 7.1 1.0 CA A:THR95 4.1 6.7 1.0 CG2 A:THR95 4.2 6.7 1.0 OD2 A:ASP241 4.2 8.8 1.0 OD1 A:ASP241 4.2 7.6 1.0 O3A A:ANP501 4.2 6.8 1.0 O2G A:ANP501 4.4 6.4 1.0 O1B A:ANP501 4.4 6.5 1.0 PA A:ANP501 4.5 7.3 1.0 CG A:ASP241 4.7 7.7 1.0 O A:GLN209 4.7 8.2 1.0 O1A A:ANP501 4.7 7.3 1.0 O A:LEU242 4.7 7.7 1.0 ND2 A:ASN207 4.8 8.2 1.0 C A:SER210 4.8 7.3 1.0 CE A:LYS94 4.8 6.4 1.0 CB A:LYS94 4.9 6.3 1.0 NH2 A:ARG199 4.9 11.6 1.0 O A:HOH2170 4.9 9.4 1.0

Q.Chang, R.Nitta, S.Inoue, N.Hirokawa. Structural Basis For the Atp-Induced Isomerization of Kinesin. J.Mol.Biol. V. 425 1869 2013.
ISSN: ISSN 0022-2836
PubMed: 23500491
DOI: 10.1016/J.JMB.2013.03.004