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Magnesium in PDB 468d: Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna

Protein crystallography data

The structure of Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna, PDB code: 468d was solved by M.Teplova, G.Minasov, V.Tereshko, G.Inamati, P.D.Cook, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 41.320, 34.550, 46.600, 90.00, 92.30, 90.00
R / Rfree (%) 20.7 / 24.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna (pdb code 468d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna, PDB code: 468d:

Magnesium binding site 1 out of 1 in 468d

Go back to Magnesium Binding Sites List in 468d
Magnesium binding site 1 out of 1 in the Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg100

b:35.5
occ:0.50
O A:HOH101 2.0 21.1 1.0
O A:HOH103 2.0 30.4 1.0
O A:HOH102 2.3 30.9 1.0
O B:HOH204 4.0 36.1 0.5
OP1 A:G484 4.2 31.1 1.0
OP1 A:C433 4.2 40.3 1.0
O B:HOH110 4.4 27.0 1.0
OP1 B:C4315 4.4 25.6 1.0
OP2 A:G484 4.6 24.9 1.0
P A:G484 4.8 25.5 1.0
OP1 B:G4814 5.0 42.1 1.0

Reference:

M.Teplova, G.Minasov, V.Tereshko, G.B.Inamati, P.D.Cook, M.Manoharan, M.Egli. Crystal Structure and Improved Antisense Properties of 2'-O-(2-Methoxyethyl)-Rna. Nat.Struct.Biol. V. 6 535 1999.
ISSN: ISSN 1072-8368
PubMed: 10360355
DOI: 10.1038/9304
Page generated: Thu Aug 15 14:15:48 2024

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