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Magnesium in PDB 4aqn: Crystal Structure of Pesticin From Y. Pestis

Protein crystallography data

The structure of Crystal Structure of Pesticin From Y. Pestis, PDB code: 4aqn was solved by K.Zeth, R.Albrecht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.819 / 1.98
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.550, 86.780, 122.270, 90.00, 96.14, 90.00
R / Rfree (%) 18.96 / 23.69

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pesticin From Y. Pestis (pdb code 4aqn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pesticin From Y. Pestis, PDB code: 4aqn:

Magnesium binding site 1 out of 1 in 4aqn

Go back to Magnesium Binding Sites List in 4aqn
Magnesium binding site 1 out of 1 in the Crystal Structure of Pesticin From Y. Pestis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pesticin From Y. Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1358

b:61.5
occ:1.00
O B:HOH2182 2.8 54.1 1.0
O B:HOH2153 3.0 40.3 1.0
OE2 B:GLU178 3.1 42.5 1.0
O B:HOH2098 3.1 39.6 1.0
O B:HOH2097 3.2 39.1 1.0
O B:HOH2183 3.6 50.8 1.0
CD B:GLU178 3.9 38.6 1.0
OE1 B:GLU178 3.9 29.6 1.0
O B:TYR300 4.0 30.9 1.0
CA B:GLN301 4.2 31.3 1.0
CD2 B:TYR300 4.5 29.9 1.0
OD2 A:ASP193 4.6 82.2 1.0
CG B:GLN301 4.6 46.9 1.0
C B:TYR300 4.7 32.5 1.0
CB B:GLN301 4.7 43.0 1.0
CE2 B:TYR300 4.7 33.6 1.0
O B:GLN301 4.8 36.7 1.0
O B:HOH2152 4.8 44.9 1.0
N B:GLN301 4.8 29.3 1.0
O B:HOH2031 4.9 36.0 1.0
O B:HOH2080 5.0 40.7 1.0

Reference:

S.I.Patzer, R.Albrecht, V.Braun, K.Zeth. Structure and Mechanistic Studies of Pesticin, A Bacterial Homolog of Phage Lysozymes. J.Biol.Chem. V. 287 23381 2012.
ISSN: ISSN 0021-9258
PubMed: 22593569
DOI: 10.1074/JBC.M112.362913
Page generated: Thu Aug 15 14:39:49 2024

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