Magnesium in PDB 4bos: Structure of OTUD2 Otu Domain in Complex with Ubiquitin K11-Linked Peptide

All present enzymatic activity of Structure of OTUD2 Otu Domain in Complex with Ubiquitin K11-Linked Peptide:
3.4.19.12;

The structure of Structure of OTUD2 Otu Domain in Complex with Ubiquitin K11-Linked Peptide, PDB code: 4bos was solved by T.E.T.Mevissen, M.K.Hospenthal, P.P.Geurink, P.R.Elliott, M.Akutsu, N.Arnaudo, R.Ekkebus, Y.Kulathu, T.Wauer, F.El Oualid, S.M.V.Freund, H.Ovaa, D.Komander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.73 / 2.35
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	164.480, 164.480, 44.730, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 23.8

The binding sites of Magnesium atom in the Structure of OTUD2 Otu Domain in Complex with Ubiquitin K11-Linked Peptide (pdb code 4bos). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of OTUD2 Otu Domain in Complex with Ubiquitin K11-Linked Peptide, PDB code: 4bos:

Magnesium binding site 1 out of 1 in the Structure of OTUD2 Otu Domain in Complex with Ubiquitin K11-Linked Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of OTUD2 Otu Domain in Complex with Ubiquitin K11-Linked Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1312 b:70.1 occ:0.33 OE2 B:GLU251 3.2 61.8 1.0 CD B:GLU251 4.1 55.9 1.0 OE1 B:GLU251 4.1 53.8 1.0

T.E.T.Mevissen, M.K.Hospenthal, P.P.Geurink, P.R.Elliott, M.Akutsu, N.Arnaudo, R.Ekkebus, Y.Kulathu, T.Wauer, F.El Oualid, S.M.V.Freund, H.Ovaa, D.Komander. Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis. Cell(Cambridge,Mass.) V. 154 169 2013.
ISSN: ISSN 0092-8674
PubMed: 23827681
DOI: 10.1016/J.CELL.2013.05.046