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Magnesium in PDB 4c4t: Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride

Enzymatic activity of Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride

All present enzymatic activity of Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride:
5.4.2.6;

Protein crystallography data

The structure of Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride, PDB code: 4c4t was solved by E.Pellegrini, M.W.Bowler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.172 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.191, 54.284, 104.496, 90.00, 90.00, 90.00
R / Rfree (%) 15.91 / 19.94

Other elements in 4c4t:

The structure of Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride also contains other interesting chemical elements:

Fluorine (F) 5 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride (pdb code 4c4t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride, PDB code: 4c4t:

Magnesium binding site 1 out of 1 in 4c4t

Go back to Magnesium Binding Sites List in 4c4t
Magnesium binding site 1 out of 1 in the Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Beta-Phosphoglucomutase in Complex with A Phosphonate Analogue of Beta-Glucose-1-Phosphate and Aluminium Tetrafluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2833

b:5.7
occ:1.00
 F2 A:ALF1219 1.9 6.0 1.0
OD1 A:ASP170 2.0 6.7 1.0
O A:HOH2014 2.0 6.6 1.0
OD2 A:ASP8 2.0 7.0 1.0
O A:ASP10 2.1 5.4 1.0
O A:HOH2016 2.1 6.4 1.0
CG A:ASP170 3.0 7.3 1.0
CG A:ASP8 3.0 5.5 1.0
C A:ASP10 3.2 4.8 1.0
OD1 A:ASP8 3.4 6.8 1.0
OD2 A:ASP170 3.4 6.0 1.0
AL A:ALF1219 3.5 6.8 1.0
F4 A:ALF1219 3.6 6.6 1.0
CA A:ASP10 3.9 5.0 1.0
CB A:ASP10 3.9 5.9 1.0
N A:ASP10 4.0 5.3 1.0
OE1 A:GLU169 4.0 7.3 1.0
F1 A:ALF1219 4.3 6.7 1.0
N A:GLY11 4.3 5.5 1.0
CB A:ASP170 4.4 6.5 1.0
CB A:ASP8 4.4 5.3 1.0
O6 A:GRX1218 4.5 5.8 1.0
O A:HOH2440 4.5 6.7 1.0
N A:ASP170 4.5 5.8 1.0
CA A:GLY11 4.6 7.0 1.0
C6 A:GRX1218 4.7 6.6 1.0
CG2 A:VAL12 4.7 8.5 1.0
C A:LEU9 4.7 6.6 1.0
CD A:GLU169 4.7 7.6 1.0
N A:GLY46 4.8 6.3 1.0
CB A:SER171 4.8 8.2 1.0
CA A:ASP170 4.9 5.5 1.0
OE2 A:GLU169 4.9 7.7 1.0
OG A:SER171 5.0 6.9 1.0

Reference:

Y.Jin, D.Bhattasali, E.Pellegrini, S.M.Forget, N.J.Baxter, M.J.Cliff, M.W.Bowler, D.L.Jakeman, G.M.Blackburn, J.P.Waltho. Alpha-Fluorophosphonates Reveal How A Phosphomutase Conserves Transition State Conformation Over Hexose Recognition in Its Two-Step Reaction. Proc.Natl.Acad.Sci.Usa V. 111 12384 2014.
ISSN: ISSN 0027-8424
PubMed: 25104750
DOI: 10.1073/PNAS.1402850111
Page generated: Thu Aug 15 16:42:09 2024

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