Magnesium in PDB 4c7o: The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna

The structure of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna, PDB code: 4c7o was solved by F.Voigts-Hoffmann, N.Schmitz, K.Shen, S.O.Shan, S.F.Ataide, N.Ban, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.222 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.720, 166.330, 154.590, 90.00, 90.00, 90.00
R / Rfree (%)	16.32 / 22.55

The structure of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna also contains other interesting chemical elements:

Fluorine	(F)	16 atoms
Aluminium	(Al)	4 atoms

The binding sites of Magnesium atom in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna (pdb code 4c7o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna, PDB code: 4c7o:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:50.4 occ:1.00 O A:HOH1006 2.2 54.7 1.0 O A:HOH1007 2.2 54.0 1.0 O1B A:GDP1003 2.2 42.9 1.0 OG1 A:THR114 2.2 42.7 1.0 F3 A:ALF1001 2.2 63.1 1.0 O A:HOH1005 2.2 46.0 1.0 F1 A:ALF1001 2.9 75.7 1.0 CB A:THR114 3.2 34.8 1.0 PB A:GDP1003 3.3 41.0 1.0 AL A:ALF1001 3.3 50.2 1.0 O2B A:GDP1003 3.4 48.9 1.0 N A:THR114 3.9 36.4 1.0 OD2 A:ASP190 4.0 50.1 1.0 OD2 A:ASP138 4.0 55.7 1.0 O2A A:GDP1003 4.0 43.5 1.0 CA A:THR114 4.1 37.8 1.0 O3B A:GDP1003 4.2 40.4 1.0 O A:HOH1004 4.2 64.7 1.0 OD1 A:ASP190 4.3 59.2 1.0 CG2 A:THR114 4.3 35.8 1.0 O A:HOH2021 4.3 64.1 1.0 F2 A:ALF1001 4.5 53.4 1.0 O3A A:GDP1003 4.5 36.6 1.0 CG A:ASP190 4.5 54.8 1.0 O A:THR191 4.5 40.6 1.0 PA A:GDP1003 4.6 38.5 1.0 O1A A:GDP1003 4.6 43.8 1.0 NH1 A:ARG141 4.7 58.0 1.0 OE1 A:GLN147 4.8 41.5 1.0 CB A:ALA144 4.8 47.9 1.0 F4 A:ALF1001 4.9 45.8 1.0 CD A:ARG141 4.9 55.2 1.0 CB A:LYS113 4.9 36.7 1.0 C A:LYS113 5.0 35.1 1.0 CG A:ASP138 5.0 57.4 1.0

Magnesium binding site 2 out of 4 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:43.7 occ:1.00 O1B B:GDP1003 2.2 48.7 1.0 O B:HOH1005 2.2 43.9 1.0 O B:HOH1007 2.2 51.9 1.0 F3 B:ALF1001 2.2 52.9 1.0 O B:HOH1006 2.2 46.4 1.0 OG1 B:THR113 2.2 63.0 1.0 CB B:THR113 3.1 53.7 1.0 PB B:GDP1003 3.3 46.4 1.0 O2B B:GDP1003 3.4 54.7 1.0 AL B:ALF1001 3.6 38.5 1.0 F1 B:ALF1001 3.6 46.0 1.0 OD2 B:ASP188 3.7 53.4 1.0 N B:THR113 4.0 55.3 1.0 OD2 B:ASP136 4.0 40.7 1.0 CA B:THR113 4.1 52.6 1.0 CG2 B:THR113 4.1 57.6 1.0 OD1 B:ASP188 4.1 59.8 1.0 O B:HOH2017 4.2 45.5 1.0 CG B:ASP188 4.3 58.5 1.0 NH1 B:ARG139 4.3 39.7 1.0 F2 B:ALF1001 4.3 40.7 1.0 O3B B:GDP1003 4.4 38.4 1.0 O2A B:GDP1003 4.4 37.8 1.0 O3A B:GDP1003 4.4 38.4 1.0 O B:HOH1004 4.5 49.1 1.0 O1A B:GDP1003 4.5 60.5 1.0 OE1 B:GLN145 4.6 53.2 1.0 O B:THR189 4.6 42.4 1.0 PA B:GDP1003 4.6 45.1 1.0 CG B:ASP136 4.9 45.3 1.0 CB B:ASP136 5.0 40.8 1.0

Magnesium binding site 3 out of 4 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:46.0 occ:1.00 O C:HOH1006 2.2 42.3 1.0 O C:HOH1005 2.2 37.4 1.0 O1B C:GDP1003 2.2 41.2 1.0 OG1 C:THR114 2.2 48.7 1.0 O C:HOH1007 2.2 63.5 1.0 F3 C:ALF1001 2.2 47.7 1.0 F1 C:ALF1001 2.6 66.0 1.0 CB C:THR114 3.2 38.7 1.0 AL C:ALF1001 3.3 45.8 1.0 PB C:GDP1003 3.3 38.2 1.0 O2B C:GDP1003 3.4 54.3 1.0 O C:HOH1004 4.0 44.5 1.0 N C:THR114 4.0 41.1 1.0 O2A C:GDP1003 4.1 37.5 1.0 OD2 C:ASP138 4.1 57.9 1.0 CA C:THR114 4.2 41.8 1.0 CG2 C:THR114 4.3 34.8 1.0 O3B C:GDP1003 4.3 32.7 1.0 OD2 C:ASP190 4.3 46.1 1.0 O3A C:GDP1003 4.4 37.1 1.0 OE1 C:GLN147 4.4 46.8 1.0 O1A C:GDP1003 4.4 53.6 1.0 O C:HOH2053 4.5 41.7 1.0 PA C:GDP1003 4.5 35.8 1.0 OD1 C:ASP190 4.5 57.4 1.0 O C:HOH2068 4.6 66.7 1.0 F2 C:ALF1001 4.6 57.9 1.0 O C:THR191 4.7 44.5 1.0 F4 C:ALF1001 4.8 50.7 1.0 CB C:ALA144 4.8 41.7 1.0 CG C:ASP190 4.8 49.0 1.0

Magnesium binding site 4 out of 4 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:36.5 occ:1.00 F3 D:ALF1001 2.1 57.9 1.0 O1B D:GDP1003 2.1 45.7 1.0 O D:HOH1005 2.2 28.0 1.0 O D:HOH1006 2.2 52.4 1.0 O D:HOH1007 2.2 53.2 1.0 OG1 D:THR113 2.2 39.4 1.0 CB D:THR113 3.1 38.0 1.0 PB D:GDP1003 3.3 42.1 1.0 O2B D:GDP1003 3.4 42.5 1.0 F1 D:ALF1001 3.6 38.1 1.0 AL D:ALF1001 3.6 39.7 1.0 OD2 D:ASP188 3.9 36.7 1.0 N D:THR113 3.9 44.2 1.0 O D:HOH2057 3.9 46.8 1.0 CA D:THR113 4.1 44.8 1.0 CG2 D:THR113 4.2 40.6 1.0 OD2 D:ASP136 4.2 39.6 1.0 OD1 D:ASP188 4.2 52.5 1.0 O C:HOH2071 4.2 47.6 1.0 O2A D:GDP1003 4.2 38.9 1.0 O3B D:GDP1003 4.3 28.9 1.0 F2 D:ALF1001 4.4 29.7 1.0 O3A D:GDP1003 4.4 29.5 1.0 CG D:ASP188 4.4 44.1 1.0 O D:HOH1004 4.4 37.0 1.0 OE1 D:GLN145 4.4 35.9 1.0 O1A D:GDP1003 4.4 56.2 1.0 PA D:GDP1003 4.5 38.9 1.0 O D:THR189 4.8 38.8 1.0 CB D:LYS112 4.9 33.2 1.0

F.Voigts-Hoffmann, N.Schmitz, K.Shen, S.O.Shan, S.F.Ataide, N.Ban. The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna Mol.Cell V. 52 643 2013.
ISSN: ISSN 1097-2765
PubMed: 24211265
DOI: 10.1016/J.MOLCEL.2013.10.005