Magnesium in PDB 4cvl: Pamurf in Complex with Amp-Pnp

All present enzymatic activity of Pamurf in Complex with Amp-Pnp:
6.3.2.10;

The structure of Pamurf in Complex with Amp-Pnp, PDB code: 4cvl was solved by K.M.Ruane, V.Majce, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.20 / 2.98
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.580, 87.380, 91.520, 90.00, 90.00, 90.00
R / Rfree (%)	21.378 / 29.498

The binding sites of Magnesium atom in the Pamurf in Complex with Amp-Pnp (pdb code 4cvl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Pamurf in Complex with Amp-Pnp, PDB code: 4cvl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Pamurf in Complex with Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pamurf in Complex with Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1453 b:52.0 occ:1.00 O3G A:ACP1452 1.9 76.7 1.0 OD1 A:ASN140 2.0 61.7 1.0 OG1 A:THR114 2.1 34.1 1.0 MG A:MG1454 2.3 56.3 1.0 O2B A:ACP1452 2.3 49.0 1.0 OE2 A:GLU164 2.5 39.4 1.0 CG A:ASN140 2.9 63.1 1.0 ND2 A:ASN140 3.1 68.4 1.0 PG A:ACP1452 3.3 70.3 1.0 CD A:GLU164 3.4 39.7 1.0 CB A:THR114 3.4 32.6 1.0 OE1 A:GLU164 3.5 41.7 1.0 PB A:ACP1452 3.7 52.5 1.0 O1A A:ACP1452 4.0 65.4 1.0 C3B A:ACP1452 4.1 61.4 1.0 ND2 A:ASN142 4.1 49.6 1.0 O2G A:ACP1452 4.2 71.4 1.0 N A:THR114 4.3 38.4 1.0 CB A:ASN140 4.3 61.4 1.0 CA A:THR114 4.3 34.5 1.0 O1G A:ACP1452 4.3 65.4 1.0 CG2 A:THR114 4.4 30.5 1.0 CG A:LYS113 4.5 46.0 1.0 O1B A:ACP1452 4.7 50.5 1.0 O3A A:ACP1452 4.8 55.7 1.0 CG A:GLU164 4.8 37.3 1.0 PA A:ACP1452 4.8 62.7 1.0 CA A:ASN140 4.9 62.4 1.0 CE A:LYS113 5.0 45.7 1.0

Magnesium binding site 2 out of 2 in the Pamurf in Complex with Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pamurf in Complex with Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1454 b:56.3 occ:1.00 O1A A:ACP1452 2.2 65.4 1.0 MG A:MG1453 2.3 52.0 1.0 O2B A:ACP1452 2.4 49.0 1.0 O3G A:ACP1452 2.4 76.7 1.0 PB A:ACP1452 3.1 52.5 1.0 PG A:ACP1452 3.1 70.3 1.0 C3B A:ACP1452 3.1 61.4 1.0 OG1 A:THR114 3.3 34.1 1.0 PA A:ACP1452 3.4 62.7 1.0 O2G A:ACP1452 3.4 71.4 1.0 O3A A:ACP1452 3.5 55.7 1.0 ND2 A:ASN140 3.5 68.4 1.0 OD1 A:ASN140 3.9 61.7 1.0 CB A:THR114 4.0 32.6 1.0 CG A:ASN140 4.2 63.1 1.0 O2A A:ACP1452 4.4 56.5 1.0 C5' A:ACP1452 4.4 58.3 1.0 O1B A:ACP1452 4.5 50.5 1.0 O5' A:ACP1452 4.5 62.4 1.0 O1G A:ACP1452 4.6 65.4 1.0 OE2 A:GLU164 4.7 39.4 1.0 CG2 A:THR114 4.8 30.5 1.0

V.Majce, K.Ruane. Pamurf in Complex with Amp-Pnp To Be Published.