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Magnesium in PDB 4ffd: Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR48

Protein crystallography data

The structure of Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR48, PDB code: 4ffd was solved by J.Seetharaman, S.Lew, L.Nivon, D.Baker, S.Bjelic, C.Ciccosanti, S.Sahdev, R.Xiao, J.K.Everett, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.81 / 2.31
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.334, 71.367, 52.926, 90.00, 104.83, 90.00
R / Rfree (%) 23.8 / 27.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR48 (pdb code 4ffd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR48, PDB code: 4ffd:

Magnesium binding site 1 out of 1 in 4ffd

Go back to Magnesium Binding Sites List in 4ffd
Magnesium binding site 1 out of 1 in the Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR48


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR48 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:30.7
occ:1.00
O A:HOH481 2.3 46.1 1.0
O A:LEU10 2.5 41.2 1.0
OD1 A:ASP180 2.5 38.4 1.0
OD2 A:ASP8 2.5 28.7 1.0
CG A:ASP180 3.2 37.5 1.0
OD2 A:ASP180 3.2 38.2 1.0
O A:HOH415 3.3 31.2 1.0
CG A:ASP8 3.5 25.3 1.0
C A:LEU10 3.7 40.0 1.0
OD1 A:ASP8 3.9 22.4 1.0
OD2 A:ASP185 4.1 33.3 1.0
CB A:ASP180 4.6 35.4 1.0
CA A:LEU10 4.6 39.6 1.0
CB A:LEU10 4.6 40.7 1.0
N A:GLY11 4.6 40.8 1.0
N A:ASP180 4.6 33.8 1.0
CA A:GLY11 4.6 38.3 1.0
N A:ASN181 4.7 34.4 1.0
CB A:ASN181 4.7 33.5 1.0
CB A:ASP8 4.8 28.8 1.0
OG1 A:THR12 4.8 30.9 1.0
N A:LEU10 4.8 37.4 1.0
OD1 A:ASP185 4.9 32.9 1.0
C A:ASP180 4.9 34.4 1.0
CA A:ASP180 4.9 33.7 1.0
CG A:ASP185 4.9 28.1 1.0

Reference:

J.Seetharaman, S.Lew, L.Nivon, D.Baker, S.Bjelic, C.Ciccosanti, S.Sahdev, R.Xiao, J.K.Everett, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR48 To Be Published.
Page generated: Fri Aug 16 14:57:24 2024

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