Atomistry » Magnesium » PDB 4gnr-4gyq » 4gw0
Atomistry »
  Magnesium »
    PDB 4gnr-4gyq »
      4gw0 »

Magnesium in PDB 4gw0: Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate.

Enzymatic activity of Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate.

All present enzymatic activity of Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate.:
2.7.3.3;

Protein crystallography data

The structure of Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate., PDB code: 4gw0 was solved by S.A.Clark, O.Davulcu, M.S.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.48 / 2.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.184, 71.103, 79.962, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate. (pdb code 4gw0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate., PDB code: 4gw0:

Magnesium binding site 1 out of 1 in 4gw0

Go back to Magnesium Binding Sites List in 4gw0
Magnesium binding site 1 out of 1 in the Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Arginine Kinase in Complex with Imino-L- Ornithine, Mgadp, and Nitrate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:17.9
occ:1.00
O A:HOH618 2.1 26.4 1.0
O A:HOH507 2.1 21.4 1.0
O A:HOH504 2.1 23.0 1.0
O1 A:NO3404 2.2 18.3 0.9
O1B A:ADP401 2.3 14.0 0.9
O1A A:ADP401 2.4 17.7 0.9
N A:NO3404 3.1 18.4 0.9
O3 A:NO3404 3.3 17.8 0.9
PA A:ADP401 3.5 18.6 0.9
PB A:ADP401 3.6 15.4 0.9
O A:HOH556 3.9 14.8 1.0
CH1 A:ILO403 3.9 19.1 1.0
O3A A:ADP401 4.0 14.7 0.9
O A:HOH541 4.1 24.1 1.0
OE2 A:GLU225 4.1 20.6 1.0
OE2 A:GLU224 4.1 20.6 1.0
OE2 A:GLU314 4.2 23.2 1.0
NH1 A:ARG229 4.2 13.7 1.0
O2 A:NO3404 4.3 18.4 0.9
OE1 A:GLU224 4.4 20.4 1.0
O3B A:ADP401 4.4 13.4 0.9
CZ3 A:TRP221 4.5 17.7 1.0
O A:HOH527 4.6 14.4 1.0
O5' A:ADP401 4.6 11.5 0.9
O2B A:ADP401 4.7 14.7 0.9
O2A A:ADP401 4.7 16.9 0.9
CD A:GLU224 4.7 20.1 1.0
CD A:GLU314 4.7 21.3 1.0
C5' A:ADP401 4.7 12.8 0.9
NH2 A:ARG229 4.8 7.9 1.0
CG A:GLU314 4.9 21.0 1.0
CH2 A:TRP221 4.9 17.8 1.0
CZ A:ARG229 5.0 11.2 1.0

Reference:

S.A.Clark, O.Davulcu, M.S.Chapman. Crystal Structures of Arginine Kinase in Complex with Adp, Nitrate, and Various Phosphagen Analogs. Biochem.Biophys.Res.Commun. V. 427 212 2012.
ISSN: ISSN 0006-291X
PubMed: 22995310
DOI: 10.1016/J.BBRC.2012.09.053
Page generated: Fri Aug 16 16:02:17 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy