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Magnesium in PDB 4gyq: Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae

Enzymatic activity of Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae

All present enzymatic activity of Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae, PDB code: 4gyq was solved by Y.Kim, C.Tesar, R.Jedrzejczak, J.Babnigg, T.A.Binkowski, J.Mire, J.Sacchettini, A.Joachimiak, Mcsg, Midwest Center For Structuralgenomics (Mcsg), Structures Of Mtb Proteins Conferring Susceptibilityto Known Mtb Inhibitors (Mtbi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.04 / 1.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.140, 74.225, 76.599, 90.00, 90.11, 90.00
R / Rfree (%) 14.3 / 18.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae (pdb code 4gyq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae, PDB code: 4gyq:

Magnesium binding site 1 out of 1 in 4gyq

Go back to Magnesium Binding Sites List in 4gyq
Magnesium binding site 1 out of 1 in the Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:30.6
occ:1.00
 O C:HOH584 2.1 35.8 1.0
O C:GLY178 2.2 13.8 1.0
O C:HOH481 2.2 21.9 1.0
O C:HOH591 2.3 31.8 1.0
O C:HOH501 2.3 29.6 1.0
C C:GLY178 3.2 12.8 1.0
CA C:GLY178 3.9 14.3 1.0
N C:GLY178 4.1 14.3 1.0
OD2 C:ASP199 4.1 28.4 1.0
O C:HOH422 4.2 20.3 1.0
N C:PRO179 4.2 12.7 1.0
O C:HOH526 4.3 30.7 1.0
CA C:PRO179 4.4 12.1 1.0
O C:LEU180 4.7 14.7 1.0
C C:PRO179 4.7 10.1 1.0
C C:PHE177 4.7 12.8 1.0
N C:LEU180 5.0 10.3 1.0

Reference:

Y.Kim, C.Tesar, R.Jedrzejczak, J.Babnigg, T.A.Binkowski, J.Mire, J.Sacchettini, A.Joachimiak. Crystal Structure of New Delhi Metallo-Beta-Lactamase-1 D223A Mutant From Klebsiella Pneumoniae To Be Published 2012.
Page generated: Mon Aug 11 13:41:33 2025

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