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Magnesium in PDB 4hiz: Phage PHI92 Endosialidase

Enzymatic activity of Phage PHI92 Endosialidase

All present enzymatic activity of Phage PHI92 Endosialidase:
3.2.1.129;

Protein crystallography data

The structure of Phage PHI92 Endosialidase, PDB code: 4hiz was solved by D.Schwarzer, C.Browning, P.G.Leiman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.97 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.858, 137.584, 140.778, 90.00, 94.64, 90.00
R / Rfree (%) 10.7 / 14.7

Other elements in 4hiz:

The structure of Phage PHI92 Endosialidase also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Calcium (Ca) 6 atoms
Sodium (Na) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Phage PHI92 Endosialidase (pdb code 4hiz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Phage PHI92 Endosialidase, PDB code: 4hiz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4hiz

Go back to Magnesium Binding Sites List in 4hiz
Magnesium binding site 1 out of 2 in the Phage PHI92 Endosialidase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Phage PHI92 Endosialidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg820

b:32.9
occ:1.00
O A:HOH1690 2.1 62.9 1.0
O A:HOH1377 2.3 59.6 1.0
OE2 A:GLU690 2.9 33.8 0.8
O A:HOH1966 2.9 67.8 1.0
OE2 A:GLU690 3.0 24.9 0.2
O A:HOH1787 3.2 73.5 1.0
CD A:GLU690 3.8 23.6 0.2
CD A:GLU690 3.8 24.9 0.8
OE1 A:GLU690 3.9 23.8 0.2
OE1 A:GLU690 4.0 19.9 0.8
O A:HOH1542 4.3 50.1 1.0
O A:HOH2094 4.3 59.9 1.0
O A:HOH2065 4.8 49.2 1.0
O B:HOH1685 5.0 35.8 1.0

Magnesium binding site 2 out of 2 in 4hiz

Go back to Magnesium Binding Sites List in 4hiz
Magnesium binding site 2 out of 2 in the Phage PHI92 Endosialidase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Phage PHI92 Endosialidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg817

b:51.4
occ:1.00
O C:HOH1593 2.4 0.3 1.0
O B:HOH1170 3.1 24.6 1.0
CH2 B:TRP251 3.4 14.2 1.0
CZ3 B:TRP251 3.7 15.0 1.0
O C:HOH1043 3.8 29.0 1.0
CD1 B:TRP344 3.8 14.8 1.0
CD1 B:ILE346 4.0 17.8 1.0
CZ2 B:TRP251 4.1 14.0 1.0
O B:HOH1104 4.2 23.6 1.0
C6' B:SUC803 4.4 30.4 1.0
NE1 B:TRP344 4.5 14.2 1.0
CE3 B:TRP251 4.6 14.2 1.0
CG B:TRP344 4.6 14.1 1.0
O B:HOH1529 4.8 34.8 1.0
CD B:PRO207 4.8 14.6 1.0
CB B:TRP344 4.8 13.5 1.0
O B:HOH1632 4.8 53.5 1.0
CE2 B:TRP251 4.9 13.2 1.0
CG B:PRO207 5.0 15.5 1.0

Reference:

D.Schwarzer, C.Browning, A.Oberbeck, K.Stummeyer, M.Muhlenhoff, R.Gerardy-Schahn, P.G.Leiman. Crystal Structure of Endosialidase From Phage PHI92 That Cleaves ALPHA2,8- and ALPHA2,9-Linked Polysialic Acid To Be Published.
Page generated: Fri Aug 16 16:19:11 2024

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