Magnesium in PDB 4jhd: Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu

The structure of Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu, PDB code: 4jhd was solved by X.Chen, F.Ni, Q.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.02 / 2.91
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	53.450, 99.800, 118.270, 65.41, 90.03, 77.77
R / Rfree (%)	20 / 25.5

The binding sites of Magnesium atom in the Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu (pdb code 4jhd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu, PDB code: 4jhd:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:56.4 occ:1.00 O1B A:ANP401 2.4 57.9 1.0 O2G A:ANP401 3.1 76.0 1.0 O1A A:ANP401 3.7 64.2 1.0 PB A:ANP401 3.9 56.6 1.0 OE1 A:GLN137 3.9 45.4 1.0 NZ A:LYS18 4.1 42.0 1.0 OD2 A:ASP11 4.2 47.1 1.0 PG A:ANP401 4.3 76.4 1.0 OD2 A:ASP154 4.3 48.2 1.0 CD A:GLN137 4.3 46.1 1.0 O3G A:ANP401 4.5 64.0 1.0 CA A:GLY13 4.6 48.9 1.0 N3B A:ANP401 4.6 66.5 1.0 OD1 A:ASP11 4.6 42.4 1.0 O3A A:ANP401 4.7 74.5 1.0 PA A:ANP401 4.8 77.5 1.0 NE2 A:GLN137 4.8 49.3 1.0 O2B A:ANP401 4.9 58.3 1.0 CG A:ASP11 4.9 41.9 1.0 CG2 A:VAL339 4.9 36.1 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:53.9 occ:1.00 O1B B:ANP401 2.2 56.0 1.0 O2G B:ANP401 2.3 52.9 1.0 O B:HOH502 2.4 47.8 1.0 PG B:ANP401 3.3 59.6 1.0 PB B:ANP401 3.4 62.7 1.0 O3G B:ANP401 3.5 61.2 1.0 O B:HOH521 3.6 46.1 1.0 O1A B:ANP401 3.8 52.6 1.0 O3A B:ANP401 3.9 57.2 1.0 N3B B:ANP401 4.0 56.2 1.0 OE1 B:GLN137 4.3 51.6 1.0 PA B:ANP401 4.4 57.2 1.0 OD2 B:ASP154 4.4 58.8 1.0 OD1 B:ASP154 4.6 52.2 1.0 NZ B:LYS18 4.6 56.8 1.0 CA B:GLY156 4.6 48.0 1.0 O1G B:ANP401 4.7 56.6 1.0 O2B B:ANP401 4.7 61.3 1.0 CD B:GLN137 4.8 50.9 1.0 OD2 B:ASP11 4.9 51.2 1.0 CA B:GLY13 4.9 58.2 1.0 CG B:ASP154 4.9 56.5 1.0 O2A B:ANP401 4.9 63.1 1.0 CG2 B:VAL339 5.0 44.4 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:69.4 occ:1.00 O D:HOH528 2.0 60.3 1.0 O1B D:ANP401 2.8 81.6 1.0 O2G D:ANP401 3.1 81.1 1.0 O1A D:ANP401 3.6 72.3 1.0 OD1 D:ASP154 3.7 55.1 1.0 OD2 D:ASP154 3.9 63.2 1.0 OE1 D:GLN137 4.1 61.8 1.0 CG D:ASP154 4.3 60.7 1.0 PB D:ANP401 4.3 74.4 1.0 CG2 D:VAL339 4.4 59.0 1.0 OD2 D:ASP11 4.4 70.4 1.0 PG D:ANP401 4.5 1.0 1.0 NZ D:LYS18 4.5 72.2 1.0 CD D:GLN137 4.7 60.7 1.0 PA D:ANP401 4.7 84.3 1.0 O3A D:ANP401 4.8 80.8 1.0 O3G D:ANP401 4.9 82.3 1.0 N3B D:ANP401 5.0 79.7 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of An Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:67.6 occ:1.00 O1B E:ANP401 2.0 85.9 1.0 O E:HOH502 2.3 55.5 1.0 O2G E:ANP401 2.6 90.2 1.0 PB E:ANP401 3.4 74.9 1.0 O1A E:ANP401 3.7 69.6 1.0 PG E:ANP401 3.7 90.0 1.0 OE1 E:GLN137 3.9 67.3 1.0 O3G E:ANP401 4.0 75.4 1.0 N3B E:ANP401 4.0 81.8 1.0 O3A E:ANP401 4.1 78.7 1.0 NZ E:LYS18 4.4 70.3 1.0 PA E:ANP401 4.5 81.5 1.0 O2B E:ANP401 4.5 75.6 1.0 OD2 E:ASP154 4.5 73.4 1.0 CD E:GLN137 4.7 65.8 1.0 CA E:GLY13 4.7 76.8 1.0 OD1 E:ASP154 4.7 71.6 1.0 CG2 E:VAL339 4.8 53.9 1.0 OD2 E:ASP11 4.9 56.2 1.0 CA E:GLY156 5.0 69.8 1.0

X.Chen, F.Ni, X.Tian, E.Kondrashkina, Q.Wang, J.Ma. Structural Basis of Actin Filament Nucleation By Tandem W Domains. Cell Rep V. 3 1910 2013.
ISSN: ESSN 2211-1247
PubMed: 23727244
DOI: 10.1016/J.CELREP.2013.04.028