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Magnesium in PDB 4jmg: Crystal Structure of the Synthetic Protein in Complex with Py Peptide

Enzymatic activity of Crystal Structure of the Synthetic Protein in Complex with Py Peptide

All present enzymatic activity of Crystal Structure of the Synthetic Protein in Complex with Py Peptide:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of the Synthetic Protein in Complex with Py Peptide, PDB code: 4jmg was solved by N.Yasui, L.Smith, S.Koide, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.88 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 109.597, 34.402, 47.799, 90.00, 105.22, 90.00
R / Rfree (%) 17.4 / 20.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Synthetic Protein in Complex with Py Peptide (pdb code 4jmg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Synthetic Protein in Complex with Py Peptide, PDB code: 4jmg:

Magnesium binding site 1 out of 1 in 4jmg

Go back to Magnesium Binding Sites List in 4jmg
Magnesium binding site 1 out of 1 in the Crystal Structure of the Synthetic Protein in Complex with Py Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Synthetic Protein in Complex with Py Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:24.1
occ:1.00
OD1 A:ASN23 1.9 21.2 0.8
O A:HOH470 2.1 25.2 1.0
O A:HOH504 2.1 32.6 1.0
O A:HOH534 2.2 26.4 1.0
O A:HOH517 2.2 33.2 1.0
CG A:ASN23 3.1 21.4 0.8
ND2 A:ASN23 3.8 28.4 0.8
CB A:ASN23 4.1 17.0 0.8
O A:ARG22 4.3 18.4 1.0
CA A:ASN23 4.3 14.1 0.8
C A:ARG22 4.6 15.3 1.0
N A:ASN23 4.8 13.4 0.8

Reference:

N.Yasui, G.M.Findlay, G.D.Gish, M.S.Hsiung, J.Huang, M.Tucholska, L.Taylor, L.Smith, W.C.Boldridge, A.Koide, T.Pawson, S.Koide. Directed Network Wiring Identifies A Key Protein Interaction in Embryonic Stem Cell Differentiation. Mol.Cell V. 54 1034 2014.
ISSN: ISSN 1097-2765
PubMed: 24910098
DOI: 10.1016/J.MOLCEL.2014.05.002
Page generated: Sat Aug 17 03:13:33 2024

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