Atomistry » Magnesium » PDB 4mff-4mpo » 4mgt
Atomistry »
  Magnesium »
    PDB 4mff-4mpo »
      4mgt »

Magnesium in PDB 4mgt: ALKBH2 R110A Cross-Linked to Undamaged Dsdna

Enzymatic activity of ALKBH2 R110A Cross-Linked to Undamaged Dsdna

All present enzymatic activity of ALKBH2 R110A Cross-Linked to Undamaged Dsdna:
1.14.11.33;

Protein crystallography data

The structure of ALKBH2 R110A Cross-Linked to Undamaged Dsdna, PDB code: 4mgt was solved by B.Chen, J.Gan, C.G.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.60
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 129.099, 129.099, 84.466, 90.00, 90.00, 120.00
R / Rfree (%) 23.1 / 27.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the ALKBH2 R110A Cross-Linked to Undamaged Dsdna (pdb code 4mgt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the ALKBH2 R110A Cross-Linked to Undamaged Dsdna, PDB code: 4mgt:

Magnesium binding site 1 out of 1 in 4mgt

Go back to Magnesium Binding Sites List in 4mgt
Magnesium binding site 1 out of 1 in the ALKBH2 R110A Cross-Linked to Undamaged Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of ALKBH2 R110A Cross-Linked to Undamaged Dsdna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:77.6
occ:1.00
NE2 A:HIS236 2.2 76.5 1.0
NE2 A:HIS171 2.2 0.1 1.0
OD1 A:ASP173 2.4 94.1 1.0
CE1 A:HIS171 2.6 0.2 1.0
CE1 A:HIS236 3.1 74.3 1.0
CD2 A:HIS236 3.3 73.1 1.0
CG A:ASP173 3.5 92.4 1.0
CD2 A:HIS171 3.5 0.2 1.0
ND1 A:HIS171 3.8 0.9 1.0
OD2 A:ASP173 3.9 85.7 1.0
ND1 A:HIS236 4.3 73.0 1.0
CG A:HIS171 4.3 96.8 1.0
CG A:HIS236 4.4 72.4 1.0
CB A:ASP173 4.7 93.2 1.0
CD1 A:ILE168 4.8 81.2 1.0
CA A:ASP173 4.9 98.0 1.0
N A:ASP173 4.9 96.8 1.0

Reference:

B.Chen, J.Gan, C.G.Yang. The Complex Structures of ALKBH2 Mutants Cross-Linked to Dsdna Reveal the Conformational Swing of β-Hairpin Sci China Chem V. 57 307 2014.
ISSN: ISSN 1674-7291
DOI: 10.1007/S11426-013-5029-Z
Page generated: Mon Aug 19 23:12:38 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy