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Magnesium in PDB 4mnr: Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta

Enzymatic activity of Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta

All present enzymatic activity of Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta:
2.4.1.129;

Protein crystallography data

The structure of Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta, PDB code: 4mnr was solved by Y.Kim, R.Wu, M.Endres, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.09 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.060, 69.159, 119.975, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta (pdb code 4mnr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta, PDB code: 4mnr:

Magnesium binding site 1 out of 1 in 4mnr

Go back to Magnesium Binding Sites List in 4mnr
Magnesium binding site 1 out of 1 in the Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:31.4
occ:1.00
 O A:HOH849 2.0 32.4 1.0
O A:HOH851 2.0 27.2 1.0
O A:HOH801 2.3 30.2 1.0
O A:HOH850 2.6 29.0 1.0
OE2 A:GLU248 2.7 36.0 1.0
O A:HOH676 3.5 25.3 1.0
CD A:GLU248 3.6 33.3 1.0
OE1 A:GLU248 3.6 31.0 1.0
O A:HOH632 3.8 21.0 1.0
CG2 A:THR202 4.4 14.4 1.0
O A:VAL197 4.7 19.1 1.0
O A:HOH814 4.9 29.1 1.0
CG A:GLU248 5.0 25.6 1.0

Reference:

Y.Kim, R.Wu, M.Endres, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of D,D-Transpeptidase Domain of Peptidoglycan Glycosyltransferase From Eggerthella Lenta To Be Published.
Page generated: Mon Aug 11 20:31:03 2025

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