Atomistry » Magnesium » PDB 4mq9-4nb4 » 4mzg
Atomistry »
  Magnesium »
    PDB 4mq9-4nb4 »
      4mzg »

Magnesium in PDB 4mzg: Crystal Structure of Human SPINDLIN1 Bound to Histone H3K4ME3 Peptide

Protein crystallography data

The structure of Crystal Structure of Human SPINDLIN1 Bound to Histone H3K4ME3 Peptide, PDB code: 4mzg was solved by X.Su, X.Ding, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.14 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.168, 122.037, 49.837, 90.00, 91.71, 90.00
R / Rfree (%) 18.3 / 20.7

Other elements in 4mzg:

The structure of Crystal Structure of Human SPINDLIN1 Bound to Histone H3K4ME3 Peptide also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human SPINDLIN1 Bound to Histone H3K4ME3 Peptide (pdb code 4mzg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human SPINDLIN1 Bound to Histone H3K4ME3 Peptide, PDB code: 4mzg:

Magnesium binding site 1 out of 1 in 4mzg

Go back to Magnesium Binding Sites List in 4mzg
Magnesium binding site 1 out of 1 in the Crystal Structure of Human SPINDLIN1 Bound to Histone H3K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human SPINDLIN1 Bound to Histone H3K4ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:21.7
occ:1.00
O D:HOH422 2.0 19.4 1.0
O B:HOH414 2.0 19.7 1.0
O B:HOH431 2.0 25.1 1.0
O B:HOH428 2.0 25.4 1.0
O D:HOH421 2.1 24.4 1.0
O D:HOH428 2.1 28.2 1.0
O D:GLU150 4.1 21.6 1.0
O B:GLU150 4.1 22.1 1.0
OE2 B:GLU138 4.2 25.7 1.0
OE2 D:GLU138 4.2 26.3 1.0
OE1 B:GLU138 4.2 29.6 1.0
OE1 D:GLU138 4.3 33.9 1.0
NE B:ARG152 4.4 38.5 1.0
OE2 B:GLU150 4.4 31.0 1.0
OE2 D:GLU150 4.4 32.0 1.0
CL D:CL303 4.4 24.7 1.0
CL B:CL304 4.5 27.8 1.0
CG B:ARG152 4.5 30.6 1.0
CD B:GLU138 4.6 31.3 1.0
CD D:GLU138 4.6 28.1 1.0
O B:HOH508 4.9 34.4 1.0
C D:GLU150 4.9 23.4 1.0
CB B:GLU150 4.9 25.3 1.0
C B:GLU150 4.9 20.9 1.0
CB D:GLU150 4.9 23.3 1.0
CD B:ARG152 5.0 34.0 1.0

Reference:

X.Su, G.Zhu, X.Ding, S.Y.Lee, Y.Dou, B.Zhu, W.Wu, H.Li. Molecular Basis Underlying Histone H3 Lysine-Arginine Methylation Pattern Readout By Spin/Ssty Repeats of SPINDLIN1 Genes Dev. V. 28 622 2014.
ISSN: ISSN 0890-9369
PubMed: 24589551
DOI: 10.1101/GAD.233239.113
Page generated: Mon Aug 19 23:23:21 2024

Last articles

Cl in 5DTJ
Cl in 5DSX
Cl in 5DRY
Cl in 5DT9
Cl in 5DRT
Cl in 5DS7
Cl in 5DSD
Cl in 5DRM
Cl in 5DRJ
Cl in 5DNF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy