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Magnesium in PDB 4o11: Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate

Enzymatic activity of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate

All present enzymatic activity of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate:
4.1.1.23;

Protein crystallography data

The structure of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate, PDB code: 4o11 was solved by A.A.Fedorov, E.V.Fedorov, B.M.Wood, J.A.Gerlt, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.41 / 1.59
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.780, 64.079, 61.646, 90.00, 115.46, 90.00
R / Rfree (%) 13.8 / 16.2

Other elements in 4o11:

The structure of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate (pdb code 4o11). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate, PDB code: 4o11:

Magnesium binding site 1 out of 1 in 4o11

Go back to Magnesium Binding Sites List in 4o11
Magnesium binding site 1 out of 1 in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg304

b:3.0
occ:0.20
 O B:HOH467 2.0 25.0 1.0
O B:HOH535 2.0 33.6 1.0
O B:SER221 2.0 19.8 1.0
O B:HOH544 2.1 34.3 1.0
O B:HOH466 2.2 26.0 1.0
O B:HOH629 2.2 33.8 1.0
C B:SER221 3.2 18.5 1.0
O B:HOH630 3.6 38.0 1.0
O B:HOH463 4.1 19.1 1.0
CA B:SER221 4.1 18.1 1.0
O B:HOH542 4.1 30.5 1.0
O B:HOH553 4.1 25.9 1.0
N B:ILE222 4.2 14.6 1.0
CA B:ILE222 4.3 12.9 1.0
O B:HOH568 4.4 31.2 1.0
O B:HOH431 4.4 18.6 1.0
CB B:SER221 4.5 14.6 1.0
OG B:SER221 5.0 16.4 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, B.M.Wood, J.A.Gerlt, S.C.Almo. Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 6-Hydroxyuridine 5'-Monophosphate To Be Published.
Page generated: Tue Aug 20 00:12:58 2024

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