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Magnesium in PDB 4osw: Crystal Structure of the S505E Mutant of Tal Effector DHAX3

Protein crystallography data

The structure of Crystal Structure of the S505E Mutant of Tal Effector DHAX3, PDB code: 4osw was solved by D.Deng, J.P.Wu, C.Y.Yan, X.J.Pan, N.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.86 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.949, 87.647, 87.437, 90.00, 102.55, 90.00
R / Rfree (%) 19.8 / 24.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the S505E Mutant of Tal Effector DHAX3 (pdb code 4osw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the S505E Mutant of Tal Effector DHAX3, PDB code: 4osw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4osw

Go back to Magnesium Binding Sites List in 4osw
Magnesium binding site 1 out of 2 in the Crystal Structure of the S505E Mutant of Tal Effector DHAX3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the S505E Mutant of Tal Effector DHAX3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:93.4
occ:1.00
O J:HOH209 1.4 79.8 1.0
O A:HOH1025 2.2 75.5 1.0
O A:HOH1029 2.2 88.8 1.0
O A:HOH1028 2.2 86.4 1.0
O J:HOH210 2.5 48.9 1.0
O A:HOH1030 3.7 80.5 1.0
OE2 A:GLU505 3.8 48.3 1.0
OD1 A:ASN470 3.9 46.1 1.0
O I:HOH116 4.1 45.1 1.0
N7 J:DG-9 4.3 47.2 1.0
O A:SER469 4.5 34.3 1.0
CD A:GLU505 4.6 42.0 1.0
O6 J:DG-9 4.7 43.7 1.0
CG A:GLU505 4.7 38.9 1.0
N7 J:DA-10 4.8 49.0 1.0
O J:HOH204 4.9 58.1 1.0
CG A:ASN470 4.9 42.6 1.0
CA A:ASN470 4.9 39.4 1.0
OD1 A:ASN436 4.9 46.7 1.0
O A:HOH1026 4.9 65.0 1.0

Magnesium binding site 2 out of 2 in 4osw

Go back to Magnesium Binding Sites List in 4osw
Magnesium binding site 2 out of 2 in the Crystal Structure of the S505E Mutant of Tal Effector DHAX3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the S505E Mutant of Tal Effector DHAX3 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg101

b:71.5
occ:1.00
O J:HOH205 1.9 65.5 1.0
O A:HOH1022 2.2 42.4 1.0
O A:HOH1023 2.3 70.9 1.0
O J:HOH206 2.5 59.5 1.0
O I:HOH128 3.0 55.1 1.0
N7 J:DG-2 3.7 37.3 1.0
O6 J:DG-2 3.9 35.1 1.0
O6 J:DG-1 4.2 27.1 1.0
OD2 A:ASP301 4.2 35.8 1.0
C5 J:DG-2 4.4 30.4 1.0
C6 J:DG-2 4.5 31.3 1.0
N4 I:DC1 4.7 29.6 1.0
O4 I:DT0 4.7 35.3 1.0
C8 J:DG-2 4.7 34.6 1.0

Reference:

D.Deng, C.Y.Yan, J.P.Wu, X.J.Pan, N.Yan. Revisiting the Tale Repeat Protein Cell V. 5 297 2014.
ISSN: ISSN 1674-800X
PubMed: 24622844
DOI: 10.1007/S13238-014-0035-2
Page generated: Tue Aug 20 00:59:22 2024

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