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Magnesium in PDB 4p1o: Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg

Protein crystallography data

The structure of Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg, PDB code: 4p1o was solved by M.A.Corral-Rodriguez, M.Stuiver, G.Abascal-Palacios, T.Diercks, I.Oyenarte, J.Ereno-Orbea, J.A.Encinar, V.Spiwok, H.Terashima, A.Accardi, D.Muller, L.A.Martinez-Cruz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.08 / 3.06
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.633, 104.633, 99.861, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 25.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg (pdb code 4p1o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg, PDB code: 4p1o:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4p1o

Go back to Magnesium Binding Sites List in 4p1o
Magnesium binding site 1 out of 2 in the Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:87.0
occ:1.00
O2B A:ATP602 2.0 43.1 1.0
O1A A:ATP602 2.0 45.0 1.0
O1G A:ATP602 2.0 43.0 1.0
PG A:ATP602 3.0 42.5 0.2
PB A:ATP602 3.1 44.1 0.5
O2G A:ATP602 3.2 41.9 0.8
PA A:ATP602 3.3 46.3 0.6
O3B A:ATP602 3.3 43.5 1.0
O3A A:ATP602 3.5 46.0 1.0
O3G B:ATP602 4.0 51.6 1.0
O2A A:ATP602 4.3 47.0 1.0
O5' A:ATP602 4.3 48.5 0.8
O3G A:ATP602 4.4 42.3 0.9
C5' A:ATP602 4.4 48.6 1.0
O1B A:ATP602 4.5 44.9 1.0
CG A:GLU570 4.6 61.6 1.0
PG B:ATP602 4.8 51.6 0.3
O2G B:ATP602 5.0 51.0 0.6

Magnesium binding site 2 out of 2 in 4p1o

Go back to Magnesium Binding Sites List in 4p1o
Magnesium binding site 2 out of 2 in the Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Bateman Domain of Murine Magnesium Transporter CNNM2 Bound to Atp-Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:93.3
occ:1.00
O1G B:ATP602 2.0 52.1 1.0
O1A B:ATP602 2.0 54.3 1.0
O2B B:ATP602 2.0 52.3 1.0
PB B:ATP602 3.2 53.1 0.6
PG B:ATP602 3.3 51.6 0.3
PA B:ATP602 3.4 55.9 0.7
O3B B:ATP602 3.6 52.7 1.0
O3G A:ATP602 3.7 42.3 0.9
O3A B:ATP602 3.7 55.3 0.8
O2G B:ATP602 3.8 51.0 0.6
C5' B:ATP602 4.3 58.0 1.0
O5' B:ATP602 4.3 58.3 0.9
O2A B:ATP602 4.4 56.6 1.0
O3G B:ATP602 4.5 51.6 1.0
O1B B:ATP602 4.6 53.6 1.0
CG B:GLU570 4.6 75.4 1.0
PG A:ATP602 4.7 42.5 0.2

Reference:

M.A.Corral-Rodriguez, M.Stuiver, G.Abascal-Palacios, T.Diercks, I.Oyenarte, J.Ereno-Orbea, J.A.Encinar, V.Spiwok, H.Terashima, A.Accardi, D.Muller, L.A.Martinez-Cruz. Structural and Ligand Binding Properties of the Bateman Domain of Human Magnesium Transporters CNNM2 and CNNM4 To Be Published.
Page generated: Tue Aug 20 01:05:01 2024

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