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Magnesium in PDB 4pfq: Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.

Enzymatic activity of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.

All present enzymatic activity of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.:
2.4.2.8;

Protein crystallography data

The structure of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763., PDB code: 4pfq was solved by V.N.Malashkevich, R.Bhosle, R.Toro, B.Hillerich, A.Gizzi, S.Garforth, A.Kar, M.K.Chan, J.Lafluer, H.Patel, B.Matikainen, S.Chamala, S.Lim, A.Celikgil, G.Villegas, B.Evans, J.Love, A.Fiser, R.Seidel, J.B.Bonanno, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.31 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.210, 123.587, 123.285, 90.00, 90.45, 90.00
R / Rfree (%) 17.3 / 21.3

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. (pdb code 4pfq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763., PDB code: 4pfq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 1 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg400

b:40.6
occ:1.00
 O A:HOH507 2.0 51.0 1.0
O A:HOH509 2.1 36.2 1.0
OE1 A:GLU126 2.2 46.5 1.0
OD1 A:ASP127 2.2 37.5 1.0
O A:HOH548 2.2 40.1 1.0
CG A:ASP127 3.1 46.1 1.0
CD A:GLU126 3.2 46.4 1.0
OD2 A:ASP127 3.4 46.1 1.0
OE2 A:GLU126 3.6 48.7 1.0
O A:HOH535 4.1 30.1 1.0
N A:ASP127 4.3 33.9 1.0
O A:HOH510 4.3 34.1 1.0
CB A:ASP127 4.4 40.5 1.0
CG A:GLU126 4.6 41.6 1.0
O A:ILE128 4.6 38.9 1.0
N A:ILE128 4.7 32.5 1.0
CA A:ASP127 4.8 38.7 1.0
O A:VAL68 4.9 31.8 1.0
CB A:GLU126 4.9 46.0 1.0
CA A:GLU126 5.0 40.4 1.0

Magnesium binding site 2 out of 12 in 4pfq

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Magnesium binding site 2 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg400

b:49.2
occ:1.00
 OE1 B:GLU126 1.9 40.2 1.0
O B:HOH509 2.0 35.8 1.0
O B:HOH510 2.0 44.4 1.0
OD1 B:ASP127 2.3 41.0 1.0
O B:HOH559 2.4 49.0 1.0
CD B:GLU126 3.0 35.7 1.0
CG B:ASP127 3.3 51.6 1.0
OE2 B:GLU126 3.3 43.2 1.0
OD2 B:ASP127 3.6 52.1 1.0
N B:ASP127 4.2 32.9 1.0
O B:HOH506 4.3 38.4 1.0
CG B:GLU126 4.3 39.9 1.0
CB B:ASP127 4.6 41.9 1.0
O B:ILE128 4.6 40.0 1.0
CB B:GLU126 4.7 39.9 1.0
N B:ILE128 4.7 35.4 1.0
O B:HOH511 4.7 57.7 1.0
CA B:GLU126 4.8 37.4 1.0
O B:VAL68 4.9 38.1 1.0
CA B:ASP127 4.9 41.4 1.0
CB B:VAL68 4.9 37.3 1.0

Magnesium binding site 3 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 3 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:53.8
occ:1.00
 O D:HOH545 2.2 33.8 1.0
OD1 B:ASP165 2.2 53.0 1.0
CG B:ASP165 3.0 45.6 1.0
OD2 B:ASP165 3.3 41.9 1.0
O D:HOH554 4.3 34.8 1.0
CA D:PRO159 4.3 42.3 1.0
O D:PRO159 4.3 47.8 1.0
CB B:ASP165 4.4 45.3 1.0
OD1 D:ASP174 4.5 46.1 1.0
NE D:ARG157 4.7 39.7 1.0
C D:PRO159 4.8 43.8 1.0
CA B:ASP165 4.8 47.4 1.0
O D:LYS158 4.8 43.2 1.0
CB D:ALA162 4.9 51.1 1.0
CZ D:ARG157 5.0 48.6 1.0

Magnesium binding site 4 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 4 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg400

b:52.7
occ:1.00
 OD1 C:ASP127 2.0 40.0 1.0
O C:HOH548 2.0 40.8 1.0
O C:HOH562 2.2 53.0 1.0
OE1 C:GLU126 2.4 37.2 1.0
CG C:ASP127 2.7 39.3 1.0
OD2 C:ASP127 2.9 46.9 1.0
CD C:GLU126 3.6 45.5 1.0
OE2 C:GLU126 4.0 44.0 1.0
O C:HOH558 4.1 44.0 1.0
CB C:ASP127 4.1 42.1 1.0
N C:ASP127 4.3 41.2 1.0
N C:ILE128 4.4 45.7 1.0
O C:ILE128 4.5 45.5 1.0
O C:HOH512 4.6 37.5 1.0
CA C:ASP127 4.7 42.6 1.0
CG2 C:ILE128 4.8 50.9 1.0
CG C:GLU126 4.9 39.5 1.0

Magnesium binding site 5 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 5 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg400

b:35.5
occ:1.00
 O D:HOH508 2.0 31.2 1.0
OD1 D:ASP127 2.0 33.1 1.0
O D:HOH511 2.1 35.4 1.0
OE1 D:GLU126 2.1 39.6 1.0
O D:HOH549 2.3 42.8 1.0
CG D:ASP127 3.1 37.5 1.0
CD D:GLU126 3.1 35.5 1.0
OD2 D:ASP127 3.4 40.8 1.0
OE2 D:GLU126 3.5 42.2 1.0
N D:ASP127 4.1 32.8 1.0
O D:HOH515 4.2 31.9 1.0
CB D:ASP127 4.4 30.9 1.0
CG D:GLU126 4.5 37.6 1.0
O D:ILE128 4.5 42.9 1.0
N D:ILE128 4.6 34.8 1.0
CB D:GLU126 4.8 36.1 1.0
CA D:ASP127 4.8 33.3 1.0
CA D:GLU126 4.8 33.2 1.0
O D:VAL68 4.9 31.3 1.0

Magnesium binding site 6 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 6 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:38.8
occ:1.00
 O D:HOH505 2.2 35.3 1.0
O D:HOH510 4.0 31.8 1.0
OD1 D:ASP186 4.1 37.1 1.0
O D:HOH513 4.8 44.5 1.0
OD2 D:ASP186 4.8 41.0 1.0
CG D:ASP186 4.9 35.3 1.0

Magnesium binding site 7 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 7 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg400

b:44.9
occ:1.00
 O E:HOH564 2.1 55.0 1.0
O E:HOH541 2.2 41.8 1.0
OE1 E:GLU126 2.2 40.6 1.0
OD1 E:ASP127 2.3 44.8 1.0
CD E:GLU126 3.2 45.0 1.0
CG E:ASP127 3.3 43.2 1.0
OD2 E:ASP127 3.6 52.3 1.0
OE2 E:GLU126 3.6 51.6 1.0
O E:HOH526 4.0 32.0 1.0
O E:HOH529 4.1 40.5 1.0
N E:ASP127 4.2 35.7 1.0
CB E:ASP127 4.5 40.0 1.0
O E:VAL68 4.6 34.3 1.0
CG E:GLU126 4.6 35.1 1.0
O E:ILE128 4.7 47.5 1.0
N E:ILE128 4.7 39.5 1.0
CB E:VAL68 4.8 34.9 1.0
CA E:GLU126 4.9 32.6 1.0
CA E:ASP127 4.9 38.0 1.0
CB E:GLU126 4.9 33.5 1.0

Magnesium binding site 8 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 8 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:34.0
occ:1.00
 O E:HOH504 2.1 28.3 1.0
O E:HOH505 2.2 26.2 1.0
O E:HOH501 2.3 39.7 1.0
O E:GLN26 3.9 40.9 1.0
OD1 E:ASP32 4.0 45.7 1.0
OD1 E:ASP207 4.1 43.5 1.0
OH E:TYR205 4.1 43.6 1.0
OD2 E:ASP32 4.1 40.3 1.0
O E:HOH512 4.1 43.3 1.0
CG E:ASP32 4.4 42.3 1.0
O E:HIS30 4.4 39.0 1.0
O E:HIS28 4.6 43.2 1.0

Magnesium binding site 9 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 9 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg400

b:34.6
occ:1.00
 O F:HOH561 2.1 31.9 1.0
O F:HOH560 2.1 36.4 1.0
OE1 F:GLU126 2.1 35.8 1.0
OD1 F:ASP127 2.2 42.0 1.0
O F:HOH574 2.2 49.0 1.0
O F:HOH543 2.2 29.0 1.0
CG F:ASP127 3.2 35.1 1.0
CD F:GLU126 3.2 37.0 1.0
OD2 F:ASP127 3.5 42.9 1.0
OE2 F:GLU126 3.6 42.9 1.0
N F:ASP127 4.2 40.2 1.0
O F:HOH527 4.2 35.2 1.0
O F:ILE128 4.5 39.9 1.0
CB F:ASP127 4.5 42.9 1.0
CG F:GLU126 4.5 40.9 1.0
N F:ILE128 4.5 39.9 1.0
CA F:ASP127 4.8 37.7 1.0
CB F:GLU126 4.8 37.1 1.0
CA F:GLU126 4.8 38.5 1.0
O F:VAL68 4.9 31.7 1.0

Magnesium binding site 10 out of 12 in 4pfq

Go back to Magnesium Binding Sites List in 4pfq
Magnesium binding site 10 out of 12 in the Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 029763. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg400

b:39.2
occ:1.00
 OE1 G:GLU126 2.0 41.9 1.0
O G:HOH510 2.1 32.3 1.0
OD1 G:ASP127 2.2 44.4 1.0
O G:HOH505 2.2 37.8 1.0
O G:HOH544 2.2 37.6 1.0
CD G:GLU126 3.0 42.4 1.0
CG G:ASP127 3.1 46.5 1.0
OE2 G:GLU126 3.4 43.8 1.0
OD2 G:ASP127 3.5 48.7 1.0
O G:HOH516 4.1 41.4 1.0
N G:ASP127 4.1 36.1 1.0
CG G:GLU126 4.4 40.5 1.0
CB G:ASP127 4.4 36.8 1.0
O G:HOH504 4.5 29.2 1.0
O G:ILE128 4.7 42.2 1.0
CA G:GLU126 4.7 33.2 1.0
N G:ILE128 4.7 36.8 1.0
O G:VAL68 4.7 37.7 1.0
CB G:GLU126 4.7 39.1 1.0
CA G:ASP127 4.8 38.0 1.0
O G:HOH551 4.9 40.2 1.0
CB G:VAL68 4.9 30.3 1.0
C G:GLU126 4.9 33.0 1.0

Reference:

V.N.Malashkevich, R.Bhosle, R.Toro, B.Hillerich, A.Gizzi, S.Garforth, A.Kar, M.K.Chan, J.Lafluer, H.Patel, B.Matikainen, S.Chamala, S.Lim, A.Celikgil, G.Villegas, B.Evans, J.Love, A.Fiser, R.Seidel, J.B.Bonanno, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc). Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Brachybacterium Faecium Dsm 4810, Nysgrc Target 0299763. To Be Published.
Page generated: Tue Aug 20 01:18:40 2024

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