Magnesium in PDB 4phg: Crystal Structure of YPT7 Covalently Modified with Gtp

The structure of Crystal Structure of YPT7 Covalently Modified with Gtp, PDB code: 4phg was solved by D.Koch, D.Wiegandt, S.Vieweg, F.Hofmann, Y.Wu, A.Itzen, M.P.Mueller, R.S.Goody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.01 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.970, 53.160, 46.910, 90.00, 106.35, 90.00
R / Rfree (%)	17.5 / 23.4

The structure of Crystal Structure of YPT7 Covalently Modified with Gtp also contains other interesting chemical elements:

Yttrium

(Y)

3 atoms

The binding sites of Magnesium atom in the Crystal Structure of YPT7 Covalently Modified with Gtp (pdb code 4phg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of YPT7 Covalently Modified with Gtp, PDB code: 4phg:

Magnesium binding site 1 out of 1 in the Crystal Structure of YPT7 Covalently Modified with Gtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of YPT7 Covalently Modified with Gtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:21.9 occ:1.00 OG1 A:THR40 1.9 21.8 1.0 O2G A:2UJ202 2.0 22.6 1.0 O2B A:2UJ202 2.1 19.7 1.0 O A:HOH325 2.1 23.7 1.0 O A:HOH324 2.1 22.1 1.0 OG1 A:THR22 2.1 20.4 1.0 CB A:THR40 3.1 25.4 1.0 PG A:2UJ202 3.1 24.5 1.0 CB A:THR22 3.2 20.6 1.0 PB A:2UJ202 3.2 18.8 1.0 O3B A:2UJ202 3.4 21.9 1.0 O3G A:2UJ202 3.7 21.2 1.0 N A:THR40 3.9 25.9 1.0 N A:THR22 3.9 21.0 1.0 OD2 A:ASP64 4.0 24.0 1.0 CA A:THR40 4.0 27.4 1.0 CA A:THR22 4.1 21.8 1.0 CG2 A:THR40 4.1 24.6 1.0 O2A A:2UJ202 4.2 25.6 1.0 O A:HOH350 4.2 28.1 1.0 OD1 A:ASP64 4.2 21.9 1.0 CG2 A:THR22 4.3 20.0 1.0 O3A A:2UJ202 4.3 20.8 1.0 O1B A:2UJ202 4.3 20.3 1.0 O1G A:2UJ202 4.3 20.6 1.0 O A:THR65 4.4 23.1 1.0 CG A:ASP64 4.5 23.7 1.0 PA A:2UJ202 4.6 22.4 1.0 O A:ILE38 4.6 22.9 1.0 O1A A:2UJ202 4.7 21.1 1.0 C A:ALA39 4.8 26.2 1.0 CE A:LYS21 5.0 20.2 1.0 CB A:LYS21 5.0 18.5 1.0

D.Koch, D.Wiegandt, S.Vieweg, F.Hofmann, Y.Wu, A.Itzen, M.P.Mueller, R.S.Goody. Crystal Structure of YPT7 Covalently Modified with Gtp To Be Published.