Magnesium in PDB 4pyt: Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase

All present enzymatic activity of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase:
1.3.1.98;

The structure of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase, PDB code: 4pyt was solved by H.Cao, L.Franz, S.Sen, C.Bingman, M.Auldridge, E.Steinmetz, D.Mead, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.17 / 1.85
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	106.786, 106.786, 201.085, 90.00, 90.00, 120.00
R / Rfree (%)	20.4 / 22.7

The structure of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase (pdb code 4pyt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase, PDB code: 4pyt:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:44.1 occ:1.00 O A:HOH503 1.8 41.4 1.0 O A:HOH504 1.8 37.3 1.0 O A:HOH506 1.8 40.0 1.0 O A:HOH505 1.9 48.8 1.0 O A:HOH501 1.9 44.4 1.0 O A:HOH502 1.9 38.4 1.0 O A:HOH698 4.1 49.2 1.0 O A:HOH658 4.2 41.2 1.0 CG A:GLN44 4.4 31.5 1.0 O A:HOH736 4.4 43.6 0.3 O A:HOH688 4.5 48.1 1.0 CB A:GLN44 4.5 36.5 1.0 OD2 A:ASP42 4.6 39.5 1.0 NZ A:LYS41 4.7 47.4 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:29.8 occ:0.30 O A:HOH509 1.8 29.5 0.3 O A:HOH512 1.8 29.6 0.3 O A:HOH511 1.8 29.6 0.3 O A:HOH507 1.8 29.4 0.3 O A:HOH508 1.8 29.4 0.3 O A:HOH510 1.8 29.4 0.3 O A:GLU286 4.0 32.6 1.0 O A:HOH607 4.1 36.5 1.0 O A:LYS287 4.4 29.6 1.0 O A:HOH761 4.5 44.2 1.0 CA A:LYS287 4.9 30.1 1.0 C A:GLU286 5.0 31.6 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg404 b:39.1 occ:0.29 O A:HOH518 1.8 43.0 0.3 O A:HOH515 1.8 43.0 0.3 O A:HOH517 1.8 43.1 0.3 O A:HOH514 1.8 40.4 0.3 O A:HOH513 1.8 40.4 0.3 O A:HOH516 1.8 40.4 0.3 OE1 A:GLU286 4.3 39.0 1.0 O A:HOH748 4.5 41.7 1.0 O A:HOH680 4.7 44.6 1.0

H.Cao, L.Franz, S.Sen, C.Bingman, M.Auldridge, E.Steinmetz, D.Mead, G.N.Phillips Jr.. Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase To Be Published.