Atomistry » Magnesium » PDB 4pyl-4q8b » 4q2g
Atomistry »
  Magnesium »
    PDB 4pyl-4q8b »
      4q2g »

Magnesium in PDB 4q2g: Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)

Enzymatic activity of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)

All present enzymatic activity of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant):
2.7.7.41;

Protein crystallography data

The structure of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant), PDB code: 4q2g was solved by X.Liu, Y.Yin, J.Wu, Z.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.10 / 3.40
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 141.410, 141.410, 197.760, 90.00, 90.00, 120.00
R / Rfree (%) 29.1 / 31.5

Other elements in 4q2g:

The structure of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) also contains other interesting chemical elements:

Mercury (Hg) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) (pdb code 4q2g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant), PDB code: 4q2g:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4q2g

Go back to Magnesium Binding Sites List in 4q2g
Magnesium binding site 1 out of 2 in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:0.5
occ:1.00
 OD1 A:ASP239 2.1 0.9 1.0
OD1 A:ASP269 2.2 0.5 1.0
OD2 A:ASP269 2.7 0.4 1.0
CG A:ASP269 2.7 0.2 1.0
CG A:ASP239 3.2 0.4 1.0
O A:ASP266 3.2 0.3 1.0
OD2 A:ASP239 3.8 0.1 1.0
CB A:ASP269 4.2 1.0 1.0
CB A:ASP239 4.2 0.8 1.0
N A:GLY270 4.2 91.2 1.0
C A:ASP266 4.4 0.1 1.0
OD1 A:ASP235 4.5 0.3 1.0
OD2 A:ASP164 4.5 1.0 1.0
N A:ASP269 4.8 97.6 1.0
CA A:ASP269 4.8 97.7 1.0
C A:ASP269 5.0 95.0 1.0

Magnesium binding site 2 out of 2 in 4q2g

Go back to Magnesium Binding Sites List in 4q2g
Magnesium binding site 2 out of 2 in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:0.6
occ:1.00
 OD1 B:ASP269 2.1 0.1 1.0
O B:ASP266 2.6 1.0 1.0
OD2 B:ASP269 2.6 0.6 1.0
OD1 B:ASP239 2.6 0.4 1.0
CG B:ASP269 2.7 1.0 1.0
CG B:ASP239 3.6 0.7 1.0
C B:ASP266 3.8 0.5 1.0
OD2 B:ASP239 4.0 0.4 1.0
CB B:ASP269 4.2 0.1 1.0
N B:GLY270 4.6 90.7 1.0
N B:ASP269 4.7 98.3 1.0
CA B:ASP266 4.7 0.7 1.0
CB B:ASP239 4.7 0.6 1.0
N B:ARG267 4.7 0.6 1.0
CA B:ARG267 4.8 0.9 1.0
C B:ARG267 4.8 0.7 1.0
OD2 B:ASP164 4.9 0.3 1.0
CA B:ASP269 4.9 98.0 1.0
N B:ILE268 5.0 1.0 1.0

Reference:

X.Liu, Y.Yin, J.Wu, Z.Liu. Structure and Mechanism of An Intramembrane Liponucleotide Synthetase Central For Phospholipid Biosynthesis Nat Commun V. 5 4244 2014.
ISSN: ESSN 2041-1723
PubMed: 24968740
DOI: 10.1038/NCOMMS5244
Page generated: Mon Aug 11 22:12:55 2025

Last articles

Mn in 5O5K
Mn in 5O7F
Mn in 5O6N
Mn in 5O6I
Mn in 5O6G
Mn in 5NTD
Mn in 5O3N
Mn in 5O25
Mn in 5NSM
Mn in 5O1U
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy