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Magnesium in PDB 4q7f: 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine.

Protein crystallography data

The structure of 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine., PDB code: 4q7f was solved by G.Minasov, S.Nocadello, L.Shuvalova, I.Dubrovska, J.Winsor, F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.36 / 1.98
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.584, 86.452, 95.647, 90.00, 116.86, 90.00
R / Rfree (%) 18.7 / 21.8

Other elements in 4q7f:

The structure of 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine. also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine. (pdb code 4q7f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine., PDB code: 4q7f:

Magnesium binding site 1 out of 1 in 4q7f

Go back to Magnesium Binding Sites List in 4q7f
Magnesium binding site 1 out of 1 in the 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:21.0
occ:1.00
OD1 A:ASN93 2.3 27.7 1.0
OD2 A:ASP56 2.3 19.9 1.0
O A:HOH764 2.3 20.9 1.0
ND1 A:HIS231 2.5 22.2 1.0
NE2 A:HIS191 2.6 21.5 1.0
CG A:ASP56 3.1 21.0 1.0
CE1 A:HIS231 3.4 22.1 1.0
MN A:MN602 3.4 22.3 1.0
OD1 A:ASP56 3.4 21.5 1.0
CG A:ASN93 3.4 25.5 1.0
CD2 A:HIS191 3.5 20.7 1.0
CG A:HIS231 3.6 22.3 1.0
CE1 A:HIS191 3.6 20.4 1.0
CA A:HIS231 3.7 22.0 1.0
OD2 A:ASP11 3.8 23.2 1.0
CB A:HIS231 3.9 22.4 1.0
O3' A:3D1603 3.9 38.2 1.0
ND2 A:ASN93 4.0 26.7 1.0
CD2 A:HIS94 4.0 20.2 1.0
O A:HIS231 4.0 21.6 1.0
O A:HOH972 4.2 33.4 1.0
N A:ASN93 4.3 22.5 1.0
C A:HIS231 4.4 22.7 1.0
CB A:ASP56 4.4 19.7 1.0
NE2 A:HIS231 4.5 22.7 1.0
NE2 A:HIS94 4.6 21.4 1.0
CB A:ASN93 4.6 24.7 1.0
CD2 A:HIS231 4.7 23.2 1.0
CG A:HIS191 4.7 20.2 1.0
ND1 A:HIS191 4.7 19.8 1.0
N A:HIS231 4.7 21.8 1.0
CG A:ASP11 4.9 20.9 1.0

Reference:

G.Minasov, S.Nocadello, L.Shuvalova, I.Dubrovska, J.Winsor, F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.98 Angstrom Crystal Structure of Putative 5'-Nucleotidase From Staphylococcus Aureus in Complex with Adenosine. To Be Published.
Page generated: Tue Aug 20 01:47:46 2024

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