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Magnesium in PDB 4qcf: Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 4qcf was solved by P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.78 / 2.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.570, 80.120, 69.900, 90.00, 110.81, 90.00
R / Rfree (%) 17.4 / 22.5

Other elements in 4qcf:

The structure of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 4qcf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 4qcf:

Magnesium binding site 1 out of 1 in 4qcf

Go back to Magnesium Binding Sites List in 4qcf
Magnesium binding site 1 out of 1 in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:4.8
occ:1.00
 O A:ARG351 2.1 18.5 1.0
OD1 A:ASN292 2.2 21.8 1.0
O A:HOH631 2.2 26.1 1.0
O A:HOH697 2.3 17.0 1.0
O A:HOH570 2.4 14.1 1.0
OD1 A:ASP354 2.5 21.6 1.0
O A:HOH501 2.6 16.2 1.0
C A:ARG351 3.3 17.8 1.0
CG A:ASN292 3.4 21.9 1.0
CG A:ASP354 3.5 22.1 1.0
OD2 A:ASP354 3.8 22.7 1.0
CB A:ASN292 4.1 21.1 1.0
N A:ILE352 4.2 17.4 1.0
CA A:ARG351 4.2 17.7 1.0
CA A:ILE352 4.2 17.5 1.0
CA A:ASN292 4.3 20.6 1.0
O A:HOH574 4.3 15.7 1.0
ND2 A:ASN292 4.4 22.7 1.0
OE2 A:GLU296 4.5 27.6 1.0
O A:ASP354 4.5 21.4 1.0
O A:HOH572 4.6 17.1 1.0
O A:ASN292 4.6 21.6 1.0
CB A:ARG351 4.8 17.7 1.0
C A:ASP354 4.8 22.1 1.0
C A:ILE352 4.8 18.0 1.0
CB A:ASP354 4.8 22.3 1.0
CG A:GLU296 4.9 25.7 1.0
C A:ASN292 4.9 21.4 1.0
N A:ASP354 5.0 20.8 1.0

Reference:

P.Mahanta, A.Bhardwaj, K.Kumar, V.S.Reddy, S.Ramakumar. Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Tue Aug 20 01:53:16 2024

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