Atomistry » Magnesium » PDB 4r17-4rcy » 4r7t
Atomistry »
  Magnesium »
    PDB 4r17-4rcy »
      4r7t »

Magnesium in PDB 4r7t: Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae

Enzymatic activity of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae

All present enzymatic activity of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae:
3.5.99.6;

Protein crystallography data

The structure of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae, PDB code: 4r7t was solved by N.Maltseva, Y.Kim, K.Kwon, W.F.Anderson, A.Joachimiak, Csgid, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.65 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.359, 135.124, 86.001, 90.00, 106.15, 90.00
R / Rfree (%) 19.9 / 25.4

Other elements in 4r7t:

The structure of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae (pdb code 4r7t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae, PDB code: 4r7t:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4r7t

Go back to Magnesium Binding Sites List in 4r7t
Magnesium binding site 1 out of 3 in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:37.9
occ:1.00
O A:HOH435 2.0 34.0 1.0
O A:ILE97 2.1 28.2 0.9
O A:HOH414 2.2 23.4 1.0
O A:HOH434 2.2 18.6 1.0
O A:ILE97 2.3 27.8 0.1
C A:ILE97 3.2 28.7 0.9
C A:ILE97 3.3 28.4 0.1
CA A:ASP98 3.9 31.7 1.0
N A:ASP98 4.0 29.3 1.0
N A:ILE97 4.1 29.6 0.1
O A:PHE94 4.1 33.0 1.0
N A:ILE97 4.1 29.9 0.9
CA A:ILE97 4.3 28.7 0.9
CA A:ILE97 4.3 28.7 0.1
O A:ASN95 4.3 27.5 1.0
N A:ILE99 4.4 27.8 1.0
O A:ILE99 4.5 33.5 1.0
C A:ASP98 4.6 31.7 1.0
C A:ASN95 4.7 28.4 1.0
C A:HIS96 5.0 31.3 1.0

Magnesium binding site 2 out of 3 in 4r7t

Go back to Magnesium Binding Sites List in 4r7t
Magnesium binding site 2 out of 3 in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg300

b:28.5
occ:1.00
O B:ILE97 2.1 23.1 1.0
O B:HOH435 2.1 26.3 1.0
O B:HOH451 2.1 26.6 1.0
O B:HOH452 2.2 21.1 1.0
O B:HOH422 2.2 24.3 1.0
C B:ILE97 3.2 21.8 1.0
O B:PHE94 3.9 23.5 1.0
CA B:ASP98 4.0 28.6 1.0
N B:ILE97 4.0 27.0 1.0
N B:ASP98 4.1 24.8 1.0
CA B:ILE97 4.2 24.2 1.0
O B:ASN95 4.3 26.9 1.0
N B:ILE99 4.4 29.5 1.0
O B:ILE99 4.4 32.1 1.0
C B:ASN95 4.6 24.9 1.0
C B:ASP98 4.6 32.5 1.0
CA B:ASN95 5.0 22.2 1.0
C B:HIS96 5.0 27.5 1.0

Magnesium binding site 3 out of 3 in 4r7t

Go back to Magnesium Binding Sites List in 4r7t
Magnesium binding site 3 out of 3 in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg300

b:36.5
occ:1.00
O C:HOH464 2.1 18.6 0.9
O C:HOH434 2.1 38.1 1.0
O C:ILE97 2.1 27.4 1.0
O C:HOH463 2.3 16.5 0.9
C C:ILE97 3.3 25.2 1.0
CA C:ASP98 3.9 27.2 1.0
N C:ASP98 4.1 24.7 1.0
N C:ILE97 4.2 28.4 1.0
O C:PHE94 4.2 24.4 1.0
CA C:ILE97 4.4 23.4 1.0
O C:ILE99 4.4 30.3 1.0
C C:ASP98 4.4 28.5 1.0
N C:ILE99 4.4 25.3 1.0
O C:ASN95 4.6 29.8 1.0
C C:ASN95 4.8 29.1 1.0
C C:HIS96 4.9 30.0 1.0

Reference:

N.Maltseva, Y.Kim, K.Kwon, W.F.Anderson, A.Joachimiak, Csgid. Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae To Be Published.
Page generated: Tue Aug 20 02:53:50 2024

Last articles

Ca in 5UXA
Ca in 5UWM
Ca in 5UWK
Ca in 5UWL
Ca in 5UVE
Ca in 5UW5
Ca in 5UW6
Ca in 5UVL
Ca in 5UVG
Ca in 5UUE
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy