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Magnesium in PDB 4rsr: Arsm Arsenic(III) S-Adenosylmethionine Methyltransferase with Trivalent Phenyl Arsencial Derivative-Roxarsone

Protein crystallography data

The structure of Arsm Arsenic(III) S-Adenosylmethionine Methyltransferase with Trivalent Phenyl Arsencial Derivative-Roxarsone, PDB code: 4rsr was solved by C.Packianathan, K.Marapakala, A.A.Ajees, P.Kandavelu, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.70 / 2.25
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 85.156, 46.406, 100.255, 90.00, 114.07, 90.00
R / Rfree (%) 17.3 / 22.4

Other elements in 4rsr:

The structure of Arsm Arsenic(III) S-Adenosylmethionine Methyltransferase with Trivalent Phenyl Arsencial Derivative-Roxarsone also contains other interesting chemical elements:

Arsenic (As) 1 atom
Calcium (Ca) 2 atoms
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Arsm Arsenic(III) S-Adenosylmethionine Methyltransferase with Trivalent Phenyl Arsencial Derivative-Roxarsone (pdb code 4rsr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Arsm Arsenic(III) S-Adenosylmethionine Methyltransferase with Trivalent Phenyl Arsencial Derivative-Roxarsone, PDB code: 4rsr:

Magnesium binding site 1 out of 1 in 4rsr

Go back to Magnesium Binding Sites List in 4rsr
Magnesium binding site 1 out of 1 in the Arsm Arsenic(III) S-Adenosylmethionine Methyltransferase with Trivalent Phenyl Arsencial Derivative-Roxarsone


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Arsm Arsenic(III) S-Adenosylmethionine Methyltransferase with Trivalent Phenyl Arsencial Derivative-Roxarsone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:29.3
occ:1.00
OE1 A:GLN292 2.7 18.8 1.0
N A:TYR290 2.8 16.1 1.0
O A:VAL320 2.8 20.3 1.0
N A:GLN292 3.1 21.7 1.0
CB A:GLN292 3.1 18.0 1.0
CA A:TYR290 3.4 18.1 1.0
N A:GLY291 3.4 19.6 1.0
C A:TYR290 3.4 19.8 1.0
CG A:GLN292 3.5 19.4 1.0
CD A:GLN292 3.5 20.3 1.0
CB A:TYR290 3.6 17.1 1.0
N A:ARG322 3.6 15.3 1.0
CA A:GLN292 3.7 19.1 1.0
C A:ASP321 3.8 15.4 1.0
OD1 A:ASP289 3.8 18.2 1.0
C A:ASP289 3.9 15.7 1.0
C A:VAL320 3.9 19.8 1.0
CA A:ASP321 4.0 17.2 1.0
CA A:ARG322 4.1 15.0 1.0
O A:TYR290 4.1 18.4 1.0
C A:GLY291 4.1 23.3 1.0
CA A:ASP289 4.2 15.9 1.0
O A:GLU288 4.2 15.1 1.0
NH2 A:ARG319 4.2 21.8 1.0
O A:ASP321 4.3 17.1 1.0
CB A:ARG322 4.3 14.8 1.0
CA A:GLY291 4.3 19.6 1.0
O A:GLN292 4.4 17.2 1.0
C A:GLN292 4.5 18.8 1.0
N A:ASP321 4.5 17.4 1.0
CG A:TYR290 4.8 18.5 1.0
NE2 A:GLN292 4.8 16.7 1.0
CG A:ASP289 4.9 19.5 1.0
CD1 A:TYR290 4.9 18.1 1.0
CG2 A:VAL320 4.9 17.0 1.0

Reference:

C.Packianathan, K.Marapakala, A.A.Ajees, P.Kandavelu, B.P.Rosen. A Disulfide Bond Cascade Mechanism For As(III) S-Adenosylmethionine Methyltransferases To Be Published.
Page generated: Tue Aug 20 03:29:41 2024

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