Atomistry » Magnesium » PDB 4rrk-4s1l » 4s1h
Atomistry »
  Magnesium »
    PDB 4rrk-4s1l »
      4s1h »

Magnesium in PDB 4s1h: Pyridoxal Kinase of Entamoeba Histolytica with Adp

Enzymatic activity of Pyridoxal Kinase of Entamoeba Histolytica with Adp

All present enzymatic activity of Pyridoxal Kinase of Entamoeba Histolytica with Adp:
2.7.1.35;

Protein crystallography data

The structure of Pyridoxal Kinase of Entamoeba Histolytica with Adp, PDB code: 4s1h was solved by K.F.Tarique, S.Devi, S.A.Abdul Rehman, S.Gourinath, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 44.256, 44.272, 75.246, 89.94, 102.89, 107.03
R / Rfree (%) 18.7 / 21.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pyridoxal Kinase of Entamoeba Histolytica with Adp (pdb code 4s1h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Pyridoxal Kinase of Entamoeba Histolytica with Adp, PDB code: 4s1h:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4s1h

Go back to Magnesium Binding Sites List in 4s1h
Magnesium binding site 1 out of 4 in the Pyridoxal Kinase of Entamoeba Histolytica with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pyridoxal Kinase of Entamoeba Histolytica with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:21.9
occ:1.00
O A:HOH550 2.0 18.9 1.0
OD1 A:ASP111 2.0 21.1 1.0
O A:HOH554 2.1 21.7 1.0
O A:THR141 2.1 15.9 1.0
O A:HOH402 2.2 20.3 1.0
O A:HOH401 2.3 19.7 1.0
CG A:ASP111 3.0 21.9 1.0
C A:THR141 3.4 16.0 1.0
OD2 A:ASP111 3.4 19.9 1.0
OG1 A:THR141 3.6 19.9 1.0
O3B A:ADP301 3.9 24.9 1.0
CB A:THR141 4.0 17.4 1.0
OG1 A:THR221 4.2 21.3 1.0
CA A:PRO142 4.2 16.7 1.0
N A:PRO142 4.2 18.0 1.0
CA A:THR141 4.3 14.3 1.0
OE1 A:GLU146 4.3 20.5 1.0
CB A:ASP111 4.3 17.1 1.0
O A:GLY217 4.4 16.7 1.0
C A:PRO142 4.5 19.9 1.0
CD1 A:ILE113 4.5 27.6 1.0
CG2 A:THR179 4.5 14.9 1.0
OG1 A:THR179 4.5 18.7 1.0
O A:PRO112 4.6 33.8 1.0
N A:ASN143 4.6 16.5 1.0
CA A:GLY217 4.6 18.3 1.0
C A:GLY217 4.6 16.0 1.0
CA A:ASP111 4.7 15.6 1.0
O A:HOH543 4.8 36.0 1.0
O A:HOH471 4.9 26.0 1.0
C A:ASP111 4.9 17.8 1.0
CD A:PRO112 4.9 20.1 1.0

Magnesium binding site 2 out of 4 in 4s1h

Go back to Magnesium Binding Sites List in 4s1h
Magnesium binding site 2 out of 4 in the Pyridoxal Kinase of Entamoeba Histolytica with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pyridoxal Kinase of Entamoeba Histolytica with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:26.2
occ:1.00
O2A A:ADP301 2.0 19.5 1.0
O A:HOH421 2.0 23.7 1.0
O1B A:ADP301 2.0 24.3 1.0
O A:HOH480 2.2 31.2 1.0
OD2 A:ASP116 2.2 24.9 1.0
PA A:ADP301 3.2 22.5 1.0
CG A:ASP116 3.2 33.9 1.0
PB A:ADP301 3.3 22.5 1.0
OD1 A:ASP116 3.5 29.6 1.0
O3A A:ADP301 3.6 21.5 1.0
O A:HOH454 3.9 32.7 1.0
O2B A:ADP301 3.9 23.9 1.0
O A:HOH542 4.0 38.6 1.0
O1A A:ADP301 4.0 20.9 1.0
OG A:SER180 4.2 29.7 1.0
ND2 A:ASN143 4.2 20.8 1.0
O A:HOH531 4.2 33.8 1.0
O5' A:ADP301 4.4 23.0 1.0
O3B A:ADP301 4.5 24.9 1.0
CB A:ASP116 4.5 32.1 1.0
OD1 A:ASP212 4.7 60.4 1.0
CG2 A:VAL216 4.9 26.1 1.0
CB A:ASN143 4.9 21.2 1.0

Magnesium binding site 3 out of 4 in 4s1h

Go back to Magnesium Binding Sites List in 4s1h
Magnesium binding site 3 out of 4 in the Pyridoxal Kinase of Entamoeba Histolytica with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Pyridoxal Kinase of Entamoeba Histolytica with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:15.8
occ:1.00
O B:HOH545 2.0 16.1 1.0
O B:HOH548 2.0 14.0 1.0
OD1 B:ASP111 2.0 13.2 1.0
O B:THR141 2.1 12.6 1.0
O B:HOH490 2.2 15.8 1.0
O B:HOH551 2.2 18.1 1.0
CG B:ASP111 3.1 13.5 1.0
C B:THR141 3.3 12.9 1.0
OD2 B:ASP111 3.4 16.4 1.0
OG1 B:THR141 3.6 17.6 1.0
O3B B:ADP302 3.9 19.2 1.0
CB B:THR141 4.0 16.2 1.0
CA B:PRO142 4.1 13.3 1.0
N B:PRO142 4.2 14.4 1.0
OG1 B:THR221 4.2 25.4 1.0
CA B:THR141 4.3 13.4 1.0
O B:GLY217 4.3 15.5 1.0
OE1 B:GLU146 4.3 20.2 1.0
CB B:ASP111 4.4 13.2 1.0
C B:PRO142 4.4 14.2 1.0
CD1 B:ILE113 4.5 25.7 1.0
CG2 B:THR179 4.5 13.7 1.0
OG1 B:THR179 4.5 17.1 1.0
N B:ASN143 4.5 14.0 1.0
C B:GLY217 4.5 14.4 1.0
CA B:GLY217 4.5 17.1 1.0
O B:PRO112 4.6 28.6 1.0
CA B:ASP111 4.7 12.5 1.0
O B:HOH493 4.8 38.8 1.0
CD B:PRO112 4.9 17.2 1.0
O B:HOH452 4.9 27.2 1.0
C B:ASP111 4.9 15.6 1.0

Magnesium binding site 4 out of 4 in 4s1h

Go back to Magnesium Binding Sites List in 4s1h
Magnesium binding site 4 out of 4 in the Pyridoxal Kinase of Entamoeba Histolytica with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Pyridoxal Kinase of Entamoeba Histolytica with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:18.9
occ:1.00
O1A B:ADP302 1.9 19.1 1.0
O1B B:ADP302 1.9 16.8 1.0
O B:HOH402 2.1 26.3 1.0
O B:HOH449 2.1 19.8 1.0
O B:HOH401 2.1 18.0 1.0
OD2 B:ASP116 2.2 25.4 1.0
PB B:ADP302 3.1 17.6 1.0
PA B:ADP302 3.2 17.1 1.0
CG B:ASP116 3.2 22.5 1.0
O3A B:ADP302 3.5 17.0 1.0
OD1 B:ASP116 3.6 23.7 1.0
O2B B:ADP302 3.7 19.8 1.0
O B:HOH417 3.9 22.0 1.0
O B:HOH486 4.0 37.1 1.0
O2A B:ADP302 4.1 19.2 1.0
ND2 B:ASN143 4.2 19.5 1.0
O B:HOH445 4.3 26.7 1.0
OG B:SER180 4.3 19.3 1.0
O3B B:ADP302 4.4 19.2 1.0
O5' B:ADP302 4.4 19.1 1.0
CB B:ASP116 4.5 22.2 1.0
CG2 B:VAL216 4.6 19.5 1.0
O B:PHE213 4.7 26.0 1.0
CB B:ASN143 4.9 15.7 1.0
CG B:ASN143 5.0 18.7 1.0

Reference:

K.F.Tarique, S.Devi, S.A.Abdul Rehman, S.Gourinath. Pyridoxal Kinase From Entamoeba Histolytica To Be Published.
Page generated: Tue Aug 20 03:37:19 2024

Last articles

Cl in 3TAV
Cl in 3TBD
Cl in 3TBE
Cl in 3TAM
Cl in 3T88
Cl in 3TAC
Cl in 3T6U
Cl in 3T9G
Cl in 3T8M
Cl in 3T8O
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy