Magnesium in PDB 4tna: Further Refinement of the Structure of Yeast T-Rna-Phe

The structure of Further Refinement of the Structure of Yeast T-Rna-Phe, PDB code: 4tna was solved by B.E.Hingerty, R.S.Brown, A.Jack, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.300, 33.400, 63.000, 90.00, 90.25, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Magnesium atom in the Further Refinement of the Structure of Yeast T-Rna-Phe (pdb code 4tna). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Further Refinement of the Structure of Yeast T-Rna-Phe, PDB code: 4tna:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Further Refinement of the Structure of Yeast T-Rna-Phe


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Further Refinement of the Structure of Yeast T-Rna-Phe within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg77 b:0.0 occ:1.00 OP2 A:U12 3.8 0.0 1.0 OP2 A:C11 3.9 0.0 1.0 OP1 A:U8 3.9 0.0 1.0 OP1 A:A9 3.9 0.0 1.0 OP2 A:U8 4.1 0.0 1.0 OP2 A:A9 4.4 0.0 1.0 P A:U8 4.5 0.0 1.0 C5 A:U12 4.6 0.0 1.0 P A:C11 4.6 0.0 1.0 OP1 A:C11 4.7 0.0 1.0 P A:A9 4.7 0.0 1.0 O5' A:C11 4.7 0.0 1.0

Magnesium binding site 2 out of 4 in the Further Refinement of the Structure of Yeast T-Rna-Phe


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Further Refinement of the Structure of Yeast T-Rna-Phe within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg78 b:0.0 occ:1.00 OP2 A:A21 2.3 0.0 1.0 OP1 A:G20 2.7 0.0 1.0 P A:A21 3.6 0.0 1.0 P A:G20 4.0 0.0 1.0 OP1 A:A21 4.0 0.0 1.0 OP2 A:G20 4.3 0.0 1.0 O3' A:G20 4.4 0.0 1.0 C5' A:G20 4.6 0.0 1.0 O5' A:G20 4.7 0.0 1.0 O5' A:A21 4.7 0.0 1.0 C5' A:A21 4.9 0.0 1.0 C3' A:G20 4.9 0.0 1.0

Magnesium binding site 3 out of 4 in the Further Refinement of the Structure of Yeast T-Rna-Phe


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Further Refinement of the Structure of Yeast T-Rna-Phe within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg79 b:0.0 occ:1.00 OP1 A:G19 2.4 0.0 1.0 P A:G19 3.7 0.0 1.0 N7 A:G20 3.7 0.0 1.0 O4 A:U59 3.8 0.0 1.0 C5' A:G19 4.1 0.0 1.0 O6 A:G20 4.2 0.0 1.0 O5' A:G19 4.2 0.0 1.0 OP2 A:G19 4.3 0.0 1.0 C8 A:G20 4.6 0.0 1.0 C5 A:G20 4.7 0.0 1.0 N4 A:C60 4.7 0.0 1.0 N3 A:C60 4.7 0.0 1.0 O3' A:G18 4.9 0.0 1.0 C6 A:G20 4.9 0.0 1.0

Magnesium binding site 4 out of 4 in the Further Refinement of the Structure of Yeast T-Rna-Phe


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Further Refinement of the Structure of Yeast T-Rna-Phe within 5.0Å range:

B.Hingerty, R.S.Brown, A.Jack. Further Refinement of the Structure of Yeast Trnaphe. J.Mol.Biol. V. 124 523 1978.
ISSN: ISSN 0022-2836
PubMed: 361973
DOI: 10.1016/0022-2836(78)90185-7