Atomistry » Magnesium » PDB 4to0-4tyq » 4ts2
Atomistry »
  Magnesium »
    PDB 4to0-4tyq »
      4ts2 »

Magnesium in PDB 4ts2: Crystal Structure of the Spinach Rna Aptamer in Complex with Dfhbi, Magnesium Ions

Protein crystallography data

The structure of Crystal Structure of the Spinach Rna Aptamer in Complex with Dfhbi, Magnesium Ions, PDB code: 4ts2 was solved by K.D.Warner, M.C.Chen, W.Song, R.L.Strack, A.Thorn, S.R.Jaffrey, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.88
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.877, 49.399, 188.410, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 25.7

Other elements in 4ts2:

The structure of Crystal Structure of the Spinach Rna Aptamer in Complex with Dfhbi, Magnesium Ions also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Potassium (K) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Spinach Rna Aptamer in Complex with Dfhbi, Magnesium Ions (pdb code 4ts2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Spinach Rna Aptamer in Complex with Dfhbi, Magnesium Ions, PDB code: 4ts2:

Magnesium binding site 1 out of 1 in 4ts2

Go back to Magnesium Binding Sites List in 4ts2
Magnesium binding site 1 out of 1 in the Crystal Structure of the Spinach Rna Aptamer in Complex with Dfhbi, Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Spinach Rna Aptamer in Complex with Dfhbi, Magnesium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mg101

b:0.5
occ:1.00
O Y:HOH202 2.1 93.1 1.0
O Y:HOH203 2.4 0.9 1.0
OP2 X:G26 2.9 98.9 1.0
F1 Y:38E104 3.1 91.7 1.0
O3' X:G25 3.5 84.7 1.0
O2' X:G25 3.7 94.9 1.0
P X:G26 3.8 90.1 1.0
OP2 Y:A64 3.8 90.2 1.0
C2 Y:38E104 4.2 71.7 1.0
O5' X:G26 4.3 83.8 1.0
O1 Y:38E104 4.4 90.9 1.0
C3' X:G25 4.6 82.8 1.0
C2' X:G25 4.7 84.4 1.0
O2 Y:U61 4.7 0.9 1.0
C1 Y:38E104 4.8 72.0 1.0
OP2 Y:U66 4.9 68.2 1.0
O2' Y:U61 5.0 0.7 1.0

Reference:

K.D.Warner, M.C.Chen, W.Song, R.L.Strack, A.Thorn, S.R.Jaffrey, A.R.Ferre-D'amare. Structural Basis For Activity of Highly Efficient Rna Mimics of Green Fluorescent Protein. Nat.Struct.Mol.Biol. V. 21 658 2014.
ISSN: ESSN 1545-9985
PubMed: 25026079
DOI: 10.1038/NSMB.2865
Page generated: Tue Aug 20 04:14:25 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy